View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3415_low_46 (Length: 238)

Name: NF3415_low_46
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3415_low_46
NF3415_low_46
[»] scaffold0257 (1 HSPs)
scaffold0257 (1-222)||(19663-19884)
[»] chr3 (28 HSPs)
chr3 (1-222)||(28187222-28187443)
chr3 (1-222)||(28057748-28057969)
chr3 (1-222)||(28068173-28068394)
chr3 (2-222)||(17743855-17744075)
chr3 (2-222)||(19045175-19045395)
chr3 (20-222)||(8538478-8538680)
chr3 (1-222)||(28163212-28163433)
chr3 (4-222)||(11421787-11422005)
chr3 (19-222)||(28152215-28152418)
chr3 (20-222)||(27920770-27920972)
chr3 (12-222)||(27954739-27954949)
chr3 (20-221)||(28038076-28038277)
chr3 (68-222)||(27430393-27430547)
chr3 (19-221)||(27777105-27777307)
chr3 (20-222)||(30993901-30994099)
chr3 (115-222)||(18078689-18078796)
chr3 (11-222)||(26203977-26204188)
chr3 (11-222)||(26109685-26109896)
chr3 (51-222)||(28508432-28508603)
chr3 (11-195)||(28136907-28137091)
chr3 (51-222)||(26138609-26138780)
chr3 (51-203)||(26232069-26232221)
chr3 (71-222)||(28479269-28479420)
chr3 (30-204)||(26126481-26126655)
chr3 (30-204)||(26176532-26176706)
chr3 (91-180)||(27458261-27458350)
chr3 (11-105)||(27356921-27357015)
chr3 (79-124)||(8549708-8549753)
[»] chr2 (4 HSPs)
chr2 (1-222)||(8021399-8021620)
chr2 (11-221)||(22400719-22400929)
chr2 (11-221)||(22965896-22966106)
chr2 (11-201)||(22792443-22792633)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-222)||(2301-2522)
[»] scaffold1147 (1 HSPs)
scaffold1147 (1-184)||(873-1056)
[»] chr7 (1 HSPs)
chr7 (79-222)||(8692444-8692587)


Alignment Details
Target: scaffold0257 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19884 - 19663
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19884 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 19785  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
    ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  19784 ccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcag 19685  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    ||||||| ||||||||||||||    
T  19684 ctaggcaattgtaggcataacc 19663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28187443 - 28187222
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| | |||||||||||||| ||||||||||    
T  28187443 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttcaatatcatccaaccattccttatcaaaa 28187344  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28187343 ccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcag 28187244  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    ||||||||||||||||||||||    
T  28187243 ctaggcagttgtaggcataacc 28187222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28057969 - 28057748
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| | |||||||||||||| ||||||||||    
T  28057969 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaa 28057870  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28057869 ccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcag 28057770  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    ||||||| ||||||||||||||    
T  28057769 ctaggcaattgtaggcataacc 28057748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28068394 - 28068173
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| | |||||||||||||| ||||||||||    
T  28068394 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaaacgcgtttttcaatatcatccaaccattccttatcaaaa 28068295  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  28068294 ccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctcag 28068195  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    ||||||| ||||||||||||||    
T  28068194 ctaggcaattgtaggcataacc 28068173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 17743855 - 17744075
Alignment:
Q  2 tgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||     
T  17743855 tgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaag 17743954  T
Q  102 caaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc 201  Q
     |||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||    
T  17743955 gaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagc 17744054  T
Q  202 taggcagttgtaggcataacc 222  Q
    |||||| ||||||||||||||    
T  17744055 taggcaattgtaggcataacc 17744075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 19045175 - 19045395
Alignment:
Q  2 tgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||     
T  19045175 tgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccatttcttatcaaaag 19045274  T
Q  102 caaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc 201  Q
     |||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||    
T  19045275 gaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacactacgagtttgaaggaatttcaatagctcagc 19045374  T
Q  202 taggcagttgtaggcataacc 222  Q
    |||||| ||||||||||||||    
T  19045375 taggcaattgtaggcataacc 19045395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 8538478 - 8538680
Alignment:
Q  20 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 119  Q
    ||||||||||||| |||||||| |||| || |||||||||||||||||||||| |||  ||||||||| | ||||||||||||| |||| ||||||||||    
T  8538478 ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatctt 8538577  T
Q  120 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  8538578 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacaatatgagtttggaggaatttcaatagctcagctagacagttgtaggcata 8538677  T
Q  220 acc 222  Q
    |||    
T  8538678 acc 8538680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28163433 - 28163212
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||| ||||| |||     
T  28163433 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgatatcatccaaccattccttatgaaat 28163334  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
      |||| ||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  28163333 ggaaatctgcgtgcatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatgagtttggaggaatttcaatagctccg 28163234  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    |||| || ||||||| ||||||    
T  28163233 ctagacaattgtaggtataacc 28163212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 11422005 - 11421787
Alignment:
Q  4 ttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaacca 103  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||  || ||||||  |    
T  11422005 ttttgagttcaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttcaacaccatccaaccattctttgtcaaaagga 11421906  T
Q  104 aatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagcta 203  Q
    ||| | ||||||||||||| |||||||||||||  ||| |  |||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||    
T  11421905 aatctacgcacatcttgtattaactcaacaaatgtagagtttcttgaacctaacacgtctaacacactatgggtctggaggaatttcaatagctcagcta 11421806  T
Q  204 ggcagttgtaggcataacc 222  Q
    |||| ||||||||||||||    
T  11421805 ggcaattgtaggcataacc 11421787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 28152418 - 28152215
Alignment:
Q  19 tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatct 118  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||| |||| |||||||||||||| | |||||||||   |||| | |||||||||    
T  28152418 tttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatct 28152319  T
Q  119 tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcat 218  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| |||||||||||    
T  28152318 tgtaataactcaacaaattcagagttgcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctctgctaggctgttgtaggcat 28152219  T
Q  219 aacc 222  Q
    ||||    
T  28152218 aacc 28152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 27920972 - 27920770
Alignment:
Q  20 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 119  Q
    ||||||||||||| || ||||| |||| |  || || |||||||||||||||| ||| |||||||||| |  |||||||||||| || ||||||||||||    
T  27920972 ttttgcaatgcattttcagagaattgtaattcatgagacaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatctt 27920873  T
Q  120 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 219  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||  |||||| ||||||||||||||||||| |||    
T  27920872 gtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttgtaggaata 27920773  T
Q  220 acc 222  Q
    |||    
T  27920772 acc 27920770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 27954949 - 27954739
Alignment:
Q  12 ccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcg 111  Q
    |||||| |||||||||||||| |||||||| |||| |  ||  | |||||||| ||||||| ||| |||||||||| |  |||||||||||| || ||||    
T  27954949 ccaacagtttttgcaatgcattttgagagaattgtaattcataagacaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcg 27954850  T
Q  112 cacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttg 211  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||||||    
T  27954849 cacatcttgtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagttg 27954750  T
Q  212 taggcataacc 222  Q
    |||| ||||||    
T  27954749 taggaataacc 27954739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 28038277 - 28038076
Alignment:
Q  20 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 119  Q
    ||||||||||||| |||||||| || | || ||||||||||||| |||||||| ||| |||| ||||| |  ||||| |||| | || ||||||||||||    
T  28038277 ttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatctt 28038178  T
Q  120 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 219  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| |||||    
T  28038177 gtaacaactcaacaaattcagtgtggcttgaacctaacacatccaacacactatgcgtttggaggaatttcaatagatcgactaggcagttgtaagcata 28038078  T
Q  220 ac 221  Q
    ||    
T  28038077 ac 28038076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 27430393 - 27430547
Alignment:
Q  68 ttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaaca 167  Q
    ||||| ||| |||||||||||| ||||||||||  |||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  27430393 ttttcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaaca 27430492  T
Q  168 cactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 222  Q
    || |||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  27430493 cattatgtggttggaggaatttcaatagctcagctaggcagttgtaggcataacc 27430547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 27777307 - 27777105
Alignment:
Q  19 tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatct 118  Q
    |||||| |||||| ||||||||| ||||  | ||| ||||||||| || ||||| ||| |||||||||| |  |||||||||||| || |||| ||||||    
T  27777307 tttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaaccacatctgcgtacatct 27777208  T
Q  119 tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcat 218  Q
    |||||||||||| |||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||| ||    
T  27777207 tgtaataactcatcaaactcagagcggcttgaacctaacacatccaacacactatggttttggaggaatttcaatagctcagcaagacagttgtaggaat 27777108  T
Q  219 aac 221  Q
    |||    
T  27777107 aac 27777105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 30994099 - 30993901
Alignment:
Q  20 ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatctt 119  Q
    ||||||||||||| |||||||| |||| || ||||||| ||||| |||||||| |||   |||||||| |    ||  |||||| |||| | ||| ||||    
T  30994099 ttttgcaatgcattttgagagaattgtaaatcaggaaataaagcacgcttttcgacactgtccaaccaat----attgaaaccacatttccacacttctt 30994004  T
Q  120 gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcata 219  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  30994003 ctaataactcaacaaattcagagtggcttgaacctaacacatccaacacacaatgcgtttggaggaatttcaatagatcagctagacagttgtaggcata 30993904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 18078689 - 18078796
Alignment:
Q  115 atcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtag 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||    
T  18078689 atcttgtaataactcaacaaattcagaatggcttgaacctaacacatccaacacattatgcgtttggaggaatttcaatagctcagctaggcaattgtag 18078788  T
Q  215 gcataacc 222  Q
    ||||||||    
T  18078789 gcataacc 18078796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 26203977 - 26204188
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||| ||||| ||||| |||||||| || ||||||  | |||| |||||||| ||| |||| ||| |||||||||| | |||||||||||||||  ||     
T  26203977 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26204076  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 210  Q
    || |||||||||||||||| | ||||||||| |||  ||| ||||| || ||||| ||| ||||||||| ||||||||||||||| ||||||||  | ||    
T  26204077 gcgcatcttgtaataactccagaaattcagagtggaatgagcctaatacttccaatacattatgggttttgaggaatttcaatagttcagctagtaaatt 26204176  T
Q  211 gtaggcataacc 222  Q
    ||||||| ||||    
T  26204177 gtaggcacaacc 26204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 26109685 - 26109896
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||| ||||| ||||| |||||||| || ||||||  | |||| |||||||| ||| |||| ||| |||||||||| | |||||||||||||||  ||     
T  26109685 tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt 26109784  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 210  Q
    || |||||||||||||||| | ||||||||| |||  ||| |||||  | ||||| | | ||||||||| ||||||||||||||| ||||||||  | ||    
T  26109785 gcgcatcttgtaataactccataaattcagagtggtatgatcctaattcttccaatatattatgggttttgaggaatttcaatagttcagctagtaaatt 26109884  T
Q  211 gtaggcataacc 222  Q
    ||||||| ||||    
T  26109885 gtaggcacaacc 26109896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 28508432 - 28508603
Alignment:
Q  51 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 150  Q
    ||||||||||||||||| | || ||| |||||||||| | |||||||||||||||  ||||| ||||||||| |||||| ||||||| ||| ||||  ||    
T  28508432 caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga 28508531  T
Q  151 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 222  Q
     || || || ||||||| |||||||||||  |||||||||||||| ||||||||  | ||||||||| ||||    
T  28508532 ccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctagtaaattgtaggcacaacc 28508603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 28137091 - 28136907
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||| ||||||||||  || |||||||| | ||||  | ||||||||| ||| ||| |||| |||  ||||||||| | ||||||||||||||| ||||    
T  28137091 tccaataatttttgcatggcgtcttgagatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgc 28136992  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatag 195  Q
    || ||||| ||| ||  || ||||||||||| |||| ||| ||||| |||||||| |||||||| ||||  ||||||||||||||    
T  28136991 gcgcatctagtagtagatccacaaattcagagtggcatgagcctaatacatccaagacactatgagtttcaaggaatttcaatag 28136907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 26138609 - 26138780
Alignment:
Q  51 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 150  Q
    ||||||||||||| ||| |||| ||| |||||||||| | |||||||||||||||  | ||  |||||||||||||||| ||||||||||| |||  ||     
T  26138609 caggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatcttgtaataactccacaaattcagagtggaatgt 26138708  T
Q  151 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 222  Q
     || || || ||||| | ||||||||||| ||||||||||||||| | ||||||   |||||||||| ||||    
T  26138709 gcccaatacttccaatatactatgggttttgaggaatttcaatagtttagctagtacgttgtaggcacaacc 26138780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 26232069 - 26232221
Alignment:
Q  51 caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttga 150  Q
    ||||| |||||| |||| |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||  |||||||||| |||  |||    
T  26232069 caggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaatga 26232168  T
Q  151 acctaacacatccaacacactatgggtttggaggaatttcaatagatcagcta 203  Q
     || || || |||||||||||||| |||| ||||||||||| ||| |||||||    
T  26232169 gcccaatacttccaacacactatgagttttgaggaatttcagtagttcagcta 26232221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 28479269 - 28479420
Alignment:
Q  71 tccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacac 170  Q
    |||||| |||||||||| | |||||| ||||||||  ||||| |||||||||||||||| ||||||| ||| ||||  |  || || || ||||||||||    
T  28479269 tccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaacacac 28479368  T
Q  171 tatgggtttggaggaatttcaatagatcagctaggcagttgtaggcataacc 222  Q
    |||||||||  |||||||||||||| || |||||  | ||||||||| ||||    
T  28479369 tatgggtttcaaggaatttcaatagttcggctagtaaattgtaggcacaacc 28479420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 26126481 - 26126655
Alignment:
Q  30 catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactc 129  Q
    ||||||||||||||||   | ||||| |||||| || | |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||    
T  26126481 catcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc 26126580  T
Q  130 aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag 204  Q
      |||||||||| |||  ||| || || || ||||||||||| ||||||| ||| |||||||| || ||||||||    
T  26126581 ctcaaattcagagtggaatgaccccaatacttccaacacactgtgggttttgagaaatttcaacagttcagctag 26126655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 26176532 - 26176706
Alignment:
Q  30 catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactc 129  Q
    |||||||||| |||||   | ||||| |||||| || | |||| ||| |||||||||| | |||||||||||||||  | ||  ||||||||||||||||    
T  26176532 catcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc 26176631  T
Q  130 aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag 204  Q
      |||||||||| |||  ||| || || || ||||||||||| ||||||| |||||||||||| || ||||||||    
T  26176632 ctcaaattcagagtggaatgagcccaatacttccaacacactgtgggttttgaggaatttcaacagttcagctag 26176706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 27458261 - 27458350
Alignment:
Q  91 cttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttg 180  Q
    |||||||||| ||||  |||| |||||||||||||||| |||||||| |||  |||||||||| |||||||| |||||||||||||||||    
T  27458261 cttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacacatcaaacacactatgggtttg 27458350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 27357015 - 27356921
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaa 105  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||    
T  27357015 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaa 27356921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 8549753 - 8549708
Alignment:
Q  79 atccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaat 124  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||    
T  8549753 atccaaccaatccttatcaaaaccacatttgcgcacatcttgtaat 8549708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8021620 - 8021399
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| | |||||||||||||| ||||||||||    
T  8021620 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcacgcttttcgatatcatccaaccattccttatcaaaa 8021521  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
      |||  || | ||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |    
T  8021520 ggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctcgg 8021421  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    |||| |||||||||||||||||    
T  8021420 ctagacagttgtaggcataacc 8021399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 22400929 - 22400719
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  |||    
T  22400929 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc 22400830  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 210  Q
    ||| ||  |||| || || ||| |||||||| || ||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||| ||  |    
T  22400829 gcaaattgtgtagtagcttaacgaattcagagtgacttgaacctaacacatctagcacactatgggtttggaggaattgtaatagatcagctagacaagt 22400730  T
Q  211 gtaggcataac 221  Q
    ||| |||||||    
T  22400729 gtatgcataac 22400719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 22966106 - 22965896
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  |||    
T  22966106 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc 22966007  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagtt 210  Q
    ||| ||  |||| || || ||| |||||||| || |||||| |||||||||| | |||||||||||||||||||||||  ||||| |||||||| ||  |    
T  22966006 gcaaattgtgtagtagcttaacgaattcagaatgacttgaagctaacacatctagcacactatgggtttggaggaattgtaatagctcagctagacaagt 22965907  T
Q  211 gtaggcataac 221  Q
    ||| |||||||    
T  22965906 gtatgcataac 22965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 22792633 - 22792443
Alignment:
Q  11 tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccaaatttgc 110  Q
    ||||||| |||||||||||||||||||||||||| |  | | | ||||||||| ||  |||| |||  ||||||||| | |||||||||||||||  | |    
T  22792633 tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctac 22792534  T
Q  111 gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc 201  Q
    ||| ||  |||| || || ||  |||||||| || ||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||    
T  22792533 gcaaattgtgtagtagcttaatgaattcagagtgacttgaacctaacacatccagcacactatgggtttggaggaattgtaatagctcagc 22792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2522 - 2301
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    ||||||||||||||| || |||||||  |||| ||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||||||||  |||||||||    
T  2522 gtgttttgagtccaaaaaattttgcagcgcattttgagagacttgtaaaccaggaaacaaggcgagcttttcaacaccatccaaccattctttatcaaaa 2423  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcag 200  Q
      |||| | |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||    |||  ||||||||||||||||||| ||||    
T  2422 ggaaatctacgcatatcttgtaatagctcaacaaattcagaatggcttgaacctaacacatccaacaggtaatgcttttggaggaatttcaatagctcag 2323  T
Q  201 ctaggcagttgtaggcataacc 222  Q
    |||| |||||||||||||||||    
T  2322 ctagacagttgtaggcataacc 2301  T

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Target: scaffold1147 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 1056 - 873
Alignment:
Q  1 gtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaa 100  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| | | ||||| ||| |||| ||||  | ||| ||||||    
T  1056 gtgttttaagtccaacaatttttgcaatgtatctagagagacttgtaaactaggaaacaaagtgtgtttttcgacaccatctaaccgatccttgtcaaaa 957  T
Q  101 ccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggagg 184  Q
     ||||| || |||||||||| | ||||||||| |||| ||| | |||||||||||||||||||||||||  |||||||||||||    
T  956 gcaaatatgtgcacatcttggattaactcaaccaatttagagttgcttgaacctaacacatccaacacatcatgggtttggagg 873  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 8692444 - 8692587
Alignment:
Q  79 atccaaccatttcttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtt 178  Q
    ||||||||| | ||||||||||||||| |||||| ||||| ||| || ||| ||||||||||| |||| ||||||||| |||||||| |||||||| |||    
T  8692444 atccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaacctaatacatccaagacactatgagtt 8692543  T
Q  179 tggaggaatttcaatagatcagctaggcagttgtaggcataacc 222  Q
    |  |||||||||||||| ||||| ||  ||||||||||| ||||    
T  8692544 tcaaggaatttcaatagctcagccagtaagttgtaggcacaacc 8692587  T

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