View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_47 (Length: 238)
Name: NF3415_low_47
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28544189 - 28543956
Alignment:
| Q |
1 |
cagaacaggcaacattcatcgccatgaacaatttaatcgtcaagatctatgattaaaaatcatgttagaacaaaactaatgagattatacttgtcatatc |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28544189 |
cagaacaggccacattcatcgccatgaacaatttaatcgtcaagatctacgattaaaaatcatgttagaacaaaactaatgagattatacttgtcatatc |
28544090 |
T |
|
| Q |
101 |
aagttgattagtnnnnnnnnnnnnnnnnnnngtaagtataatcggtgattagggtttaccctcgcatctttggtggcgtagattaggtatgtgacgatat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
28544089 |
aagttgattagtaaaaaaataaaactaaaaagtaagtataatcggtgattagggtttacccttgcatctttcgtggcgtagattaggtatgtgacgatat |
28543990 |
T |
|
| Q |
201 |
atattgtttcaatgacacacccagctgaattaat |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
28543989 |
atattgtttcaatgacacacccagctgaattaat |
28543956 |
T |
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