View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_48 (Length: 237)
Name: NF3415_low_48
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35832792 - 35832571
Alignment:
| Q |
1 |
tatattacatgtactactactttgtctatttcaaggttgcaaatttatcaaaaatacttcctaaggatacggaagttcttcctggtggagtggatgatat |
100 |
Q |
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| T |
35832792 |
tatattacatgtactactactttgtctatttcaaggttgcaaatttatcaaaaatacttcctaaggatacggaagttcttcctggtggagtggatgatat |
35832693 |
T |
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| Q |
101 |
gactaaactgtcctatttgcacgagcctggagtcctgcagaacttaaaagctagatatgaattgaataaaatatatgtaaggctttcttccctttgatgc |
200 |
Q |
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| T |
35832692 |
gactaaactgtcctatttgcacgagcctggagtcctgcagaacttaaaagctagatatgaattgaataaaatatatgtaaggctttcttccctttgatgc |
35832593 |
T |
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| Q |
201 |
cataagatccaatgaagttaat |
222 |
Q |
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| T |
35832592 |
cataagatccaatgaagttaat |
35832571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 49001362 - 49001231
Alignment:
| Q |
89 |
agtggatgatatgactaaactgtcctatttgcacgagcctggagtcctgcagaacttaaaagctagatatgaattgaataaaatatatgtaaggctttct |
188 |
Q |
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|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
49001362 |
agtggatgatatgaataaaatgtcctatttgcacgagtctggagtcctgcagaacttaaaagccagatatcaattgaataaaatatatgtaaggcttcct |
49001263 |
T |
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| Q |
189 |
tccctttgatgccataagatccaatgaagtta |
220 |
Q |
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| T |
49001262 |
tccctttgatgccataagatccaatgaagtta |
49001231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 49001707 - 49001618
Alignment:
| Q |
1 |
tatattacatgtactactactttgtctatttcaaggttg---caaatttatcaaaaatacttcctaaggatacggaagttcttcctggtg |
87 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
49001707 |
tataatacatgtactgctattttgtctatttcaaggttgttgcaaatttatcaaaaatacttcctaaggatacgaaagttcttcccggtg |
49001618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 47693094 - 47693242
Alignment:
| Q |
36 |
gttgcaaatttatcaaaaatacttcctaaggatacggaagttcttcctggtggagtggatgatatgactaaactgtcctatttgcacgagcctggagtcc |
135 |
Q |
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|||||||| |||||||||||| | || || |||| ||||| || |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
47693094 |
gttgcaaagttatcaaaaatattacccaaagatatggaagctccagctgggggagtggatgatatgactaaattgtcctatttgcatgagcctggagtcc |
47693193 |
T |
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| Q |
136 |
tgcagaacttaaaagctagatatgaattgaataaaatatatgtaaggct |
184 |
Q |
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| T |
47693194 |
tggagaatttaaaaattagatatgaattgaatgaaatatatgtaaggct |
47693242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39805811 - 39805773
Alignment:
| Q |
1 |
tatattacatgtactactactttgtctatttcaaggttg |
39 |
Q |
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| T |
39805811 |
tatattacatgtactactattttgtctatttcacggttg |
39805773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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