View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_51 (Length: 227)
Name: NF3415_low_51
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 41335914 - 41335722
Alignment:
| Q |
1 |
gaagtactaataattattctctaacacaatttttaaaatagtctcgtctattcagttgaaatttaaattttactagctaaattattatagattcggtaaa |
100 |
Q |
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| T |
41335914 |
gaagtactaataattattctctaacacaatttttaaaatagtctcgtctattcagttgaaatttaaattttactagctaaattattatagattcggtaaa |
41335815 |
T |
|
| Q |
101 |
atttaattaatagaaacaagtgtgttnnnnnnntatgtgttatacatcatgacatagcatttttctttatcaaaatgcaacaacttggatgga |
193 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41335814 |
atttaattaatagaaacaagtgtgttaaaaaaatatgtgttatacatcatgacatagcatttttctttatcaaaatgcaacaacttgggtgga |
41335722 |
T |
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