View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_52 (Length: 227)
Name: NF3415_low_52
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 25940750 - 25940973
Alignment:
| Q |
3 |
atcaaaaacaacaaaagattttaccttatttttctcttttttgtttctctcgtataaaacctacattgttcagtaacaaaacctgtttcaacaaaatacg |
102 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940750 |
atcaaaaacaacaaaa-attttaccttatttttctcttttttgtttctctcgtataaaacctacattgttcagtaacaaaacctgtttcaacaaaatacg |
25940848 |
T |
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| Q |
103 |
aagaaaacgttggaagctccaaaccctatcaatggagggtttcgagacttcatcaaactcgcaatcaaagctgaaaatcaatgaaagggttgaggtaatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25940849 |
aagaaaacgttggaagctccaaaccctatcaatggagggtttcgagacttcatcaaactcgcaatcaaagctgaaaatcaatgaaagggttgaggtaatg |
25940948 |
T |
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| Q |
203 |
tcgatattctttctgggttcttgat |
227 |
Q |
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||||||||||||||||||||||||| |
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| T |
25940949 |
tcgatattctttctgggttcttgat |
25940973 |
T |
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