View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_54 (Length: 219)
Name: NF3415_low_54
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5829641 - 5829828
Alignment:
| Q |
18 |
tttttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagatt |
117 |
Q |
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| T |
5829641 |
tttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaacagacgtgtcatatccatctggaagatt |
5829740 |
T |
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| Q |
118 |
acttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgtta |
205 |
Q |
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| T |
5829741 |
acttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgtta |
5829828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 5768807 - 5768621
Alignment:
| Q |
18 |
tttttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagatt |
117 |
Q |
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| T |
5768807 |
ttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccgacagaggtgtcataaccatttggaagaga |
5768708 |
T |
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| Q |
118 |
acttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgtt |
204 |
Q |
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| T |
5768707 |
gcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttctttgccataagctatgtt |
5768621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 5827159 - 5827074
Alignment:
| Q |
119 |
cttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgtt |
204 |
Q |
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| T |
5827159 |
cttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgtt |
5827074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 29327155 - 29327341
Alignment:
| Q |
18 |
tttttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagatt |
117 |
Q |
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| T |
29327155 |
ttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgccaacagaagtgtcataaccatcaggaagaga |
29327254 |
T |
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| Q |
118 |
acttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgtt |
204 |
Q |
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| T |
29327255 |
acttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttctttaccataagctatgtt |
29327341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 38525344 - 38525387
Alignment:
| Q |
29 |
gctcttgcaatagcaatgcgctgcttctgtcctccggacagttg |
72 |
Q |
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| T |
38525344 |
gctcttgcaatcgcaatgcgctgcttctgtccaccagacagttg |
38525387 |
T |
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