View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_58 (Length: 204)
Name: NF3415_low_58
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46524812 - 46524644
Alignment:
| Q |
15 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggt |
114 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||| || |||||||||| |
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| T |
46524812 |
cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46524713 |
T |
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| Q |
115 |
attcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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| T |
46524712 |
attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtg |
46524644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46479316 - 46479148
Alignment:
| Q |
15 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggt |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||| ||||| || |||||||||| |
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| T |
46479316 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46479217 |
T |
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| Q |
115 |
attcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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| T |
46479216 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtg |
46479148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46520746 - 46520578
Alignment:
| Q |
15 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggt |
114 |
Q |
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| T |
46520746 |
cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt |
46520647 |
T |
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| Q |
115 |
attcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||| |||| |
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| T |
46520646 |
attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtg |
46520578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46532365 - 46532197
Alignment:
| Q |
15 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggt |
114 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||||| |
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| T |
46532365 |
cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt |
46532266 |
T |
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| Q |
115 |
attcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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|||||||||||||||| |||||| |||| |||||||| | ||||| || |||||||||||||| |||| |
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| T |
46532265 |
attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtg |
46532197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46490518 - 46490350
Alignment:
| Q |
15 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| |||||||||||||||| || |||||||||| |
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| T |
46490518 |
cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt |
46490419 |
T |
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| Q |
115 |
attcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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|||||||||||||||||||| |||| |||||||| | ||||| ||||||||||||||||| |||| |
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| T |
46490418 |
attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtg |
46490350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 46326455 - 46326620
Alignment:
| Q |
18 |
agaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactctggtatt |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || || || ||||||||||| |||||||| ||||||||||| | |
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| T |
46326455 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
46326554 |
T |
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| Q |
118 |
catggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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| T |
46326555 |
cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtg |
46326620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 46322744 - 46322915
Alignment:
| Q |
12 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactct |
111 |
Q |
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|
|||||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||| || || || ||||||||||| |||||||| ||||||| |
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| T |
46322744 |
gagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactct |
46322843 |
T |
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| Q |
112 |
ggtattcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
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| T |
46322844 |
ggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtg |
46322915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 46494819 - 46494648
Alignment:
| Q |
12 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactct |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||||| || || || ||||||| |
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| T |
46494819 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactct |
46494720 |
T |
|
| Q |
112 |
ggtattcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatctacgtg |
183 |
Q |
| |
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|||| || |||||||||||||||| ||||| |||| ||| | ||||| ||||| ||||| ||||| |||| |
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| T |
46494719 |
ggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtg |
46494648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 46517108 - 46516942
Alignment:
| Q |
12 |
gagcacagaacagtggaagtgaatggcatcaaaatgcatattgctgaaaaaggaaaagaaggtccagtggtcttgttccttcatggctttcccgaactct |
111 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| | || || |||||||||||||| ||| | || |||||||||||||| ||||| ||| ||| |
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| T |
46517108 |
gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct |
46517009 |
T |
|
| Q |
112 |
ggtattcatggcgccaccagattgtaactctcagctccctctgctaccgtgctgttgctccagatct |
178 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||| ||||||| | || ||||||||||| |
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| T |
46517008 |
ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatct |
46516942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 7475308 - 7475350
Alignment:
| Q |
117 |
tcatggcgccaccagattgtaactctcagctccctctgctacc |
159 |
Q |
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|||||||||||||||||| || |||||||||||||| |||||| |
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| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctacc |
7475350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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