View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_59 (Length: 204)
Name: NF3415_low_59
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 10403999 - 10403828
Alignment:
| Q |
19 |
ggaatttgaattgcatgtcgttgaatctgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcg |
118 |
Q |
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| T |
10403999 |
ggaatttgaattgcatgtcgttgaatctgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcg |
10403900 |
T |
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| Q |
119 |
aatgatacaagaatgcattgcacaaattctacccatccaaatgttcctaaacttctctctatcatttcatct |
190 |
Q |
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| T |
10403899 |
aatgatacaagaatgcattgcacaaattctacccatccaaatgttcctaaacttctctctatcatttcatct |
10403828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 10377983 - 10377839
Alignment:
| Q |
46 |
tgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcgaatgatacaagaatgcattgcacaaat |
145 |
Q |
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| T |
10377983 |
tgtgcaatgccatgtttgatattcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgcgaacgaaacaagaatgcattgcacaaat |
10377884 |
T |
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| Q |
146 |
tctacccatccaaatgttcctaaacttctctctatcatttcatct |
190 |
Q |
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| T |
10377883 |
tctacccatccaaatcttcctaaacccctttccatcatttcatct |
10377839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 14542975 - 14542897
Alignment:
| Q |
39 |
ttgaatctgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgc |
117 |
Q |
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| T |
14542975 |
ttgaatttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgc |
14542897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 14580612 - 14580690
Alignment:
| Q |
39 |
ttgaatctgtgcaatgccatgttgggtaatcgtcggtgtaaattgttatgaatgattgttgtgcgtcgaagaacattgc |
117 |
Q |
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| T |
14580612 |
ttgaatttgtgcagtgccattttgggtaattatcagtgtaaatgcttatgaatgattgttgtgcatcaaagaacattgc |
14580690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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