View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3415_low_6 (Length: 504)
Name: NF3415_low_6
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 45 - 490
Target Start/End: Original strand, 33093151 - 33093596
Alignment:
| Q |
45 |
aattgtgcagcaactgtaagcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaatctatgagagaccaag |
144 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33093151 |
aattgtgaagcaactgtaagcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaatctatgagagaccaag |
33093250 |
T |
|
| Q |
145 |
tttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttacttcatacttcattgattcgttggtgagtttgaaacacttaacc |
244 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33093251 |
tttgtcttctttctctgttggcaactttatggaaccaagagaaagcaaaaatgttacttcatacttcattgattcgttggtgagtttgaaacacttaacc |
33093350 |
T |
|
| Q |
245 |
catcttgatttgtcactttcatgtgttactgatgatatgcttatatgtgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33093351 |
catcttgatttgtcactttcatgtgttactgatgatatgcttatctctgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcg |
33093450 |
T |
|
| Q |
345 |
aatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgatgatgacaactc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33093451 |
aatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaatgcaaagtttttgaatgatgatgacaactc |
33093550 |
T |
|
| Q |
445 |
ctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33093551 |
ctcaatgttgtatccatatcttcgcgatttggtgtctataaatgtc |
33093596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 102 - 433
Target Start/End: Original strand, 33708295 - 33708626
Alignment:
| Q |
102 |
taactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttac |
201 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||| | |||||| ||| | |||||||| |||||||||| |
|
|
| T |
33708295 |
taacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgttaccgactttaaagaagctagagaaagagaaaatgttac |
33708394 |
T |
|
| Q |
202 |
ttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactttcatgtgttactgatgatatgcttatatgtgtagcaaat |
301 |
Q |
| |
|
||| | |||||||||||| ||| |||||||||| | |||||| |||||||||||| |||||| |||||||| ||||| | | || || | |
|
|
| T |
33708395 |
ttcgtgcttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacactt |
33708494 |
T |
|
| Q |
302 |
gaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatc |
401 |
Q |
| |
|
| || ||||||||| ||||| |||||||| |||| | ||||| ||||||| ||| ||| ||||||| |||||||||||||||| ||| | ||||||||| |
|
|
| T |
33708495 |
gcagctcttcctttgaggaaacttgtcctccaaggtcgctgccaatatacttataccggtatctcttgtttcttgtcaaagtgtcgatctctgcagcatc |
33708594 |
T |
|
| Q |
402 |
taaatcttcaaaaggcaaagtttttgaatgat |
433 |
Q |
| |
|
|| || ||||| |||||||||||||||||| |
|
|
| T |
33708595 |
tagatattcaacgtgcaaagtttttgaatgat |
33708626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 33714161 - 33714317
Alignment:
| Q |
102 |
taactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttac |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| | ||| |||||| ||| ||| |||||||| |||| | ||||||| |||||||||| |
|
|
| T |
33714161 |
taacacatgctggtattgcttctgcaatctaccagagaccgactttaagttctttatctcttaccaactttaaggaagctagagaaatagaaaatgttac |
33714260 |
T |
|
| Q |
202 |
ttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtc |
258 |
Q |
| |
|
|| |||||||||||||| ||||||||||| || | |||||| |||||||||||| |
|
|
| T |
33714261 |
tttgtacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtc |
33714317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 433
Target Start/End: Original strand, 36810242 - 36810625
Alignment:
| Q |
48 |
tgtgcagcaactgtaagcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaatctatgagagaccaagttt |
147 |
Q |
| |
|
||||||| |||||| ||||| |||| |||||||||||||| || || ||||| ||||| | ||||||||||||| ||||||| | ||||||| | ||| |
|
|
| T |
36810242 |
tgtgcaggaactgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccacttt |
36810341 |
T |
|
| Q |
148 |
gtcttctttctctgttagcaactttatggaaccaagagaaagcaaaaatgttacttcatacttcattgattcgttggtgagtttgaaacacttaacccat |
247 |
Q |
| |
|
| |||| ||||| ||| | ||||| ||| ||| |||| || || |||||| |||||||| |||||| |||| ||||||||| ||||| | |
|
|
| T |
36810342 |
gaattctctctct--tagaatctttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgt |
36810439 |
T |
|
| Q |
248 |
cttgatttgtcactttcatgtgttactgatgatatgcttatatgtgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaat |
347 |
Q |
| |
|
| ||||||||| ||||||| || ||||| ||||| | | ||||| ||||| ||||||||| ||| | ||| |||| |||||||||| | | | |
|
|
| T |
36810440 |
catgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaatt |
36810539 |
T |
|
| Q |
348 |
atacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
433 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| ||||| | |||| |||| |||||||| | |||||||||||||||||| |
|
|
| T |
36810540 |
atacatatcatgggatctcttatctactgtcaaagtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgat |
36810625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 33714390 - 33714461
Alignment:
| Q |
362 |
atctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaatgat |
433 |
Q |
| |
|
||||||| |||||||||||| ||| ||| | ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33714390 |
atctcttgtttcttgtcaaattgtcgatctctgcagcatctagatcttcaatgtgcaaagtttttgaatgat |
33714461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 27005043 - 27005107
Alignment:
| Q |
101 |
ctaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgttag |
165 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||||| |
|
|
| T |
27005043 |
ctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttag |
27005107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 433
Target Start/End: Original strand, 37580306 - 37580429
Alignment:
| Q |
310 |
tcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatctt |
409 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| | | || ||||||| ||||| | |||||| |||||||||||| || || |||||||| || || |
|
|
| T |
37580306 |
tcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtcaatcactgaagcatctagatatt |
37580405 |
T |
|
| Q |
410 |
caaaaggcaaagtttttgaatgat |
433 |
Q |
| |
|
||||| |||| ||||||||||||| |
|
|
| T |
37580406 |
caaaaagcaacgtttttgaatgat |
37580429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 18723872 - 18723944
Alignment:
| Q |
358 |
cgggatctcttatttcttgtcaaagtgtagatttgtgcagcatctaaatcttcaaaaggcaaagtttttgaat |
430 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||| |||||| ||||| |||| |||| ||||||||| |
|
|
| T |
18723872 |
cgggatctcttatctcttgtcaaagtgtcgatttctgcaacatctagatctttaaaatgcaatctttttgaat |
18723944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University