View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_7 (Length: 461)
Name: NF3415_low_7
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 31 - 440
Target Start/End: Original strand, 24676848 - 24677257
Alignment:
| Q |
31 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
130 |
Q |
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| T |
24676848 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
24676947 |
T |
|
| Q |
131 |
accctttcctcccttcaatccttggtacatatgaatccccacagtttcttgcatgggccctaccttattgtcccggtggtgacctcaatgttctccgtta |
230 |
Q |
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| T |
24676948 |
accctttcctcccttcaatccttggtacatatgaatccccacagtttcttgcatgggccctgccttattgtcccggtggtgacctcaatgtcctccgtta |
24677047 |
T |
|
| Q |
231 |
ccgtcaaaacgaccgtgttttctctccgtccgttgtccggttctacctagctgaaatcctctgcgctctcgaccaccttcattccatgggcatcgtttac |
330 |
Q |
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| T |
24677048 |
ccgtcaaaacgaccgtgttttctctccgtccgttgtccggttctacctagctgaaatcctctgcgctctcgaccaccttcattccatgggcattgtttac |
24677147 |
T |
|
| Q |
331 |
cgtgacctaaaaccagaaaatgttctaatacaacattccggccacgtcacgttaaccgatttcgacctctcacgtaaacttaacccaagaacttttaaaa |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24677148 |
cgtgacctaaaaccagaaaatgttctaatacaacattccggccacgtcacgttaaccgatttcgacctctcacgtaaacttaacccaagaacttttaaaa |
24677247 |
T |
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| Q |
431 |
ccgttgttgc |
440 |
Q |
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| T |
24677248 |
ccgttgttgc |
24677257 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 411
Target Start/End: Original strand, 41986463 - 41986603
Alignment:
| Q |
271 |
ttctacctagctgaaatcctctgcgctctcgaccaccttcattccatgggcatcgtttaccgtgacctaaaaccagaaaatgttctaatacaacattccg |
370 |
Q |
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|||||| |||| || || ||||||||||| | || |||||| |||||||||| | ||| |||||||| ||||| ||||| ||||| || ||||| || | |
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| T |
41986463 |
ttctacatagcagagattctctgcgctcttcaacatcttcataccatgggcatagcttatcgtgaccttaaacctgaaaacgttcttattcaacaatctg |
41986562 |
T |
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| Q |
371 |
gccacgtcacgttaaccgatttcgacctctcacgtaaactt |
411 |
Q |
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| T |
41986563 |
gccacgtcaccttaactgatttcgatctctcacgtaaactt |
41986603 |
T |
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