View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_8 (Length: 449)
Name: NF3415_low_8
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 37558181 - 37557752
Alignment:
| Q |
1 |
tatcaacgtcttttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtca |
100 |
Q |
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| T |
37558181 |
tatcaacgtcttttaatttacaatacctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtca |
37558082 |
T |
|
| Q |
101 |
aacgtaggtatgtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcact |
200 |
Q |
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| T |
37558081 |
aacgtaggtatgtgactccatacatccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcact |
37557982 |
T |
|
| Q |
201 |
gtcataccttggaagtgcattttccccagcaacttcaaggttctctctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaatta |
300 |
Q |
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| T |
37557981 |
gtcataccttggaagtgcattttccccagcaacttcaaggttctctctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaatta |
37557882 |
T |
|
| Q |
301 |
tgagtaacttgtttcatgaatagcaacatgtcatggagtttatcaatcacagattctttttgattttgcagagaacatattagattagatttgaagccag |
400 |
Q |
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| T |
37557881 |
tgagtaacttgtttcatgaatagcaacatgtcatggagtttatcaatcacagattctttttgattttgcagagaacatattagattagatttgaagccag |
37557782 |
T |
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| Q |
401 |
aatgaattacctgctgaacaagttcctggg |
430 |
Q |
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| T |
37557781 |
aatgaattacctgctgaacaagttcctggg |
37557752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 15504394 - 15504151
Alignment:
| Q |
25 |
acctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccataca |
124 |
Q |
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| T |
15504394 |
acctgatctgcatgcatctttaccacaaactttttgaatatatcaaaatttgattgttgcattagatcatctgatagacgaaggtatgttactccataca |
15504295 |
T |
|
| Q |
125 |
tccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttc |
224 |
Q |
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| T |
15504294 |
tccgaagttttggagggccgtctttgttgaccccttgtggtcttgcattcagtatgatttggttataagctgttgcatcataccttgaaagtgcattttc |
15504195 |
T |
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| Q |
225 |
cccagcaacttcaaggttctctctccatccatcactcaagacct |
268 |
Q |
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| T |
15504194 |
gccagcaacttcaatgttttctctccaacctccactcaatacct |
15504151 |
T |
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