View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_9 (Length: 449)
Name: NF3415_low_9
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 14241784 - 14241570
Alignment:
| Q |
18 |
agcctatacttcacaaaatcaatctgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaagga |
117 |
Q |
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| T |
14241784 |
agcctatacttcacaaaatcaatatgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaagga |
14241685 |
T |
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| Q |
118 |
agacattactacgagtct---tgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctat |
214 |
Q |
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| T |
14241684 |
agacattactacgagtcttgttgttacattcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagttcattttcttatctat |
14241585 |
T |
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| Q |
215 |
tttctacatccttac |
229 |
Q |
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| T |
14241584 |
tttctacatccttac |
14241570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 12957222 - 12957379
Alignment:
| Q |
42 |
tgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttac |
141 |
Q |
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| T |
12957222 |
tgtggcagcagagaaagctgcattttatcattgtgcattttacagtacacacaacacactctttgattacaaaggtagacattactatgagtcttgttac |
12957321 |
T |
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| Q |
142 |
attcaaggttccattgatttcatatttggtcgtggcagaaccatcttccaagtgagtt |
199 |
Q |
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| T |
12957322 |
attcaaggctccattgatttcatatttggtcgtggcagaaccatcttccaagtgagtt |
12957379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 295 - 431
Target Start/End: Complemental strand, 14241504 - 14241370
Alignment:
| Q |
295 |
ttatgcagaattgtgagatatttatggttggtgacaaaaggataaaaaccccgtggggtcaattacagctgcaaatagagaaaatgaaagtgagatgagt |
394 |
Q |
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| T |
14241504 |
ttatgcagaattgtgagatatttgtggttgatgacaaaaggatattaattc-gtggg-tcaattacagctgcaaatagagaaaatgaaagtgagatgagt |
14241407 |
T |
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| Q |
395 |
ggatttatatttgtcaaaggcaaagtttatggcattg |
431 |
Q |
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| T |
14241406 |
ggatttatatttgtcaaaggcaaagtttatggcattg |
14241370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 12957448 - 12957583
Alignment:
| Q |
294 |
cttatgcagaattgtgagatatttatggttggtgacaaaaggataaaaaccccgtggggtcaattacagctgcaaatagagaaaatgaaagtgagatgag |
393 |
Q |
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| T |
12957448 |
cttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattc-gtggg-tcaattacagctgcaaatagagaaaatgaaagtgagatgag |
12957545 |
T |
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| Q |
394 |
tggatttatatttgtcaaaggcaaagtttatggcattg |
431 |
Q |
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| T |
12957546 |
tggatttatatttatcaaaggcaaagtttatggcattg |
12957583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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