View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3416_low_2 (Length: 401)

Name: NF3416_low_2
Description: NF3416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3416_low_2
NF3416_low_2
[»] chr8 (1 HSPs)
chr8 (1-401)||(4618693-4619093)
[»] chr1 (15 HSPs)
chr1 (216-401)||(38138736-38138921)
chr1 (101-401)||(45984569-45984861)
chr1 (276-401)||(43044279-43044404)
chr1 (9-401)||(43067587-43067980)
chr1 (274-401)||(7891828-7891955)
chr1 (300-401)||(50911744-50911845)
chr1 (276-401)||(43083123-43083248)
chr1 (276-401)||(3300013-3300138)
chr1 (276-401)||(43077464-43077589)
chr1 (2-142)||(7892138-7892281)
chr1 (282-401)||(40035572-40035691)
chr1 (9-171)||(43082855-43083020)
chr1 (9-171)||(43044011-43044176)
chr1 (23-134)||(3299761-3299875)
chr1 (10-123)||(38139003-38139118)
[»] chr4 (2 HSPs)
chr4 (273-401)||(4230741-4230869)
chr4 (300-401)||(19965403-19965504)
[»] chr5 (1 HSPs)
chr5 (262-401)||(16348412-16348551)
[»] chr6 (2 HSPs)
chr6 (275-399)||(7530137-7530261)
chr6 (276-399)||(7520600-7520723)
[»] chr2 (4 HSPs)
chr2 (282-361)||(16231466-16231545)
chr2 (300-401)||(33860137-33860238)
chr2 (300-349)||(34690143-34690192)
chr2 (300-349)||(34712555-34712604)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 4618693 - 4619093
Alignment:
Q  1 gttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactgatatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618693 gttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactgatatgaca 4618792  T
Q  101 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618793 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcac 4618892  T
Q  201 tttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618893 tttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaa 4618992  T
Q  301 tgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaat 400  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618993 tgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaat 4619092  T
Q  401 c 401  Q
    |    
T  4619093 c 4619093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 216 - 401
Target Start/End: Complemental strand, 38138921 - 38138736
Alignment:
Q  216 agatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagcca 315  Q
    |||||||||||||  |||||||||| ||||||| | |||| |||  ||||| |||||  ||||||||||||||||||| || | ||||||||||||||||    
T  38138921 agatcatcctgcaagattcacttcttcaatgcctacttagcgatcttaccttctgcatgaggatccttcttcttcacaaccatgatgactccaacagcca 38138822  T
Q  316 cagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatc 401  Q
    ||||| |||| ||||||||||||||||||||||| |||| ||||||| ||||||||  |||||||||||||| |||||||||||||    
T  38138821 cagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaatc 38138736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 101 - 401
Target Start/End: Complemental strand, 45984861 - 45984569
Alignment:
Q  101 gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcac 200  Q
    |||||||||| |||||||| |||||||||||||||||||||  ||  ||||||||||| |||||||||||||| ||||    |||||||| |||||  |     
T  45984861 gtgcagacttcacacttaatctgcaaaacaagtttactagaggagaaatagaaatactaaggaccaaagactatttatg---gtaataacaacgataga- 45984766  T
Q  201 tttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaa 300  Q
    ||||  |  |    ||||||||| |||||| |||| || | ||||  ||| ||||||||  ||||||||||| ||||||||||||||||||||||||| |    
T  45984765 tttcgctaga----tagatcatcttgcacagttcattttttcaatatcgacttagtgattttacctcctgcagcaggatccttcttcttcacagccttga 45984670  T
Q  301 tgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaat 400  Q
    |||||||||||||||||||| || |   |||||||||| ||||||||||||||| ||||||   ||| |||| |||||||||||| ||||||||||||||    
T  45984669 tgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaat 45984570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 43044279 - 43044404
Alignment:
Q  276 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 375  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||    
T  43044279 ggatccttcttctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtct 43044378  T
Q  376 ctaccaccatgggcttggtgggaatc 401  Q
    | ||||||||||||||||||||||||    
T  43044379 caaccaccatgggcttggtgggaatc 43044404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 401
Target Start/End: Complemental strand, 43067980 - 43067587
Alignment:
Q  9 tagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgca 105  Q
    ||||||||| |||||||||||||||  |||| ||| | ||| ||||||| ||| |||||||||| ||||||  |||||||| ||  || ||||  |||||    
T  43067980 tagacacaacaattaaagcataaaaataaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgca 43067881  T
Q  106 gacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcactttct 205  Q
    ||||||||||||||  || |||||||||  ||||||| ||  ||||||||||| |||||||||||| | |||||   |||||||| | |||   ||| |     
T  43067880 gacttgacacttaatatgaaaaacaagtaaactagactagaaatagaaatactaaggaccaaagaccatttatt---gtaataactatgatatgcttccc 43067784  T
Q  206 atttaaatttagatcatcctgcacaattcacttctgc---aatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaatg 302  Q
    |  || ||  |||||||||||| |  ||||||||| |   ||||| || || ||     ||  |||| |||  ||||||||||||| |||||| || |||    
T  43067783 aagtagat--agatcatcctgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatg 43067686  T
Q  303 actccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatc 401  Q
    || ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||| ||||||||||||||||||||||||    
T  43067685 acgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatc 43067587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 7891955 - 7891828
Alignment:
Q  274 caggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagt 373  Q
    |||||||||| ||||||||| |||| |||||||||| |||||||||| |||| |||||||||||||||||||| || |||||||||||   || ||||||    
T  7891955 caggatccttattcttcacatccttgatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagt 7891856  T
Q  374 ctctaccaccatgggcttggtgggaatc 401  Q
    ||||||||||||||||||||||||||||    
T  7891855 ctctaccaccatgggcttggtgggaatc 7891828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 50911744 - 50911845
Alignment:
Q  300 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 399  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||    
T  50911744 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtgggaa 50911843  T
Q  400 tc 401  Q
    ||    
T  50911844 tc 50911845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 43083123 - 43083248
Alignment:
Q  276 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 375  Q
    ||||||||||||| |||||| || ||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||||| |||||| | ||| |||||||    
T  43083123 ggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtct 43083222  T
Q  376 ctaccaccatgggcttggtgggaatc 401  Q
    | ||||||||||||||||||||||||    
T  43083223 caaccaccatgggcttggtgggaatc 43083248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 3300013 - 3300138
Alignment:
Q  276 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 375  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||  |||| || || |||||||| |||||||| |||| |||||| | ||| |||||||    
T  3300013 ggatccttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 3300112  T
Q  376 ctaccaccatgggcttggtgggaatc 401  Q
    | ||||||||||||||||||||||||    
T  3300113 caaccaccatgggcttggtgggaatc 3300138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 401
Target Start/End: Complemental strand, 43077589 - 43077464
Alignment:
Q  276 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 375  Q
    |||||||||| || ||||||| | ||||| ||||||||||||||| ||||  |||| |||| || ||||||||| |||| |||||| | ||| |||||||    
T  43077589 ggatccttctactccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtct 43077490  T
Q  376 ctaccaccatgggcttggtgggaatc 401  Q
    | ||||||||||||||||||||||||    
T  43077489 caaccaccatgggcttggtgggaatc 43077464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 7892281 - 7892138
Alignment:
Q  2 ttcacattagacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactgata--tga 98  Q
    |||||| ||||||||||||| | ||||||||| | |||||||||| | |||||||| | | |||||||| | |||||||||||||||| ||| ||  |||    
T  7892281 ttcacactagacacaataatcatagcataaaaacaaaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaaaagctgctagatga 7892182  T
Q  99 cagtgcagacttgacacttaacctgcaaaacaagtttactagac 142  Q
    | |||||||| | ||||||||||| |||| ||||||||||||||    
T  7892181 cggtgcagacatcacacttaacctacaaagcaagtttactagac 7892138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 401
Target Start/End: Complemental strand, 40035691 - 40035572
Alignment:
Q  282 ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctacca 381  Q
    |||||| ||||| |||| |||||||||||||| |||||||||||  |||||||||| | ||||||| | ||||||| ||| || | |  || ||||||||    
T  40035691 ttcttcgtcacatccttgatgactccaacagcgacagttcgacgcgtgtctctgactgtaaaacgggcaagtgaagaatattttgcattaggctctacca 40035592  T
Q  382 ccatgggcttggtgggaatc 401  Q
    ||||||||||||| ||||||    
T  40035591 ccatgggcttggttggaatc 40035572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 43082855 - 43083020
Alignment:
Q  9 tagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgca 105  Q
    ||||||||| |||||||||||||||  |||| ||| | ||| ||||||| ||| |||||||||| ||||||  |||||||| ||  || ||||  |||||    
T  43082855 tagacacaacaattaaagcataaaaacaaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgca 43082954  T
Q  106 gacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac 171  Q
    ||||||||||||||  || |||||||||  ||||||| ||  ||||||||||| |||||| |||||    
T  43082955 gacttgacacttaatatgaaaaacaagtaaactagacgagaaatagaaatactaaggacccaagac 43083020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 43044011 - 43044176
Alignment:
Q  9 tagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgca 105  Q
    ||||||||| |||||||||||||||  |||| ||| ||||  ||||||| ||| |||||||||| ||||||  ||||| || ||  || ||||  |||||    
T  43044011 tagacacaacaattaaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgca 43044110  T
Q  106 gacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac 171  Q
    ||||||||||||||  || |||||||||  ||||||  ||  ||||||||||| ||||||||||||    
T  43044111 gacttgacacttaatatgaaaaacaagtaaactagaagagaaatagaaatactaaggaccaaagac 43044176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 3299761 - 3299875
Alignment:
Q  23 aaagcataaa-acgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaa 119  Q
    |||||||||| ||| |||||||||||||||||||| ||| ||| |||||| |||| | |||||||||  |  || ||||| |||||||||||||||||||    
T  3299761 aaagcataaacacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaa 3299860  T
Q  120 cctgcaaaacaagtt 134  Q
     | | ||||||||||    
T  3299861 tccgaaaaacaagtt 3299875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 38139118 - 38139003
Alignment:
Q  10 agacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg--atatgacagtgcag 106  Q
    ||||||| |||| | ||||||||| |||||||||||  ||| ||||||  ||||||||||| | |||||| ||||||||| |||  | ||||| ||||||    
T  38139118 agacacagtaatcatagcataaaaacgaaaaagaaacggcc-tgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcag 38139020  T
Q  107 acttgacacttaacctg 123  Q
    |||||||||||||||||    
T  38139019 acttgacacttaacctg 38139003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 401
Target Start/End: Original strand, 4230741 - 4230869
Alignment:
Q  273 ccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaag 372  Q
    ||||| |||||||||| |||| |||| || || ||||||||||||||| | || || |||||||||||||||||||| |||| |||||| | ||| ||||    
T  4230741 ccaggttccttcttctccacacccttgataaccccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaag 4230840  T
Q  373 tctctaccaccatgggcttggtgggaatc 401  Q
    |||| ||||||||||||||||||||||||    
T  4230841 tctcaaccaccatgggcttggtgggaatc 4230869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 19965504 - 19965403
Alignment:
Q  300 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 399  Q
    |||||||||| |||||||||| |||| ||||||||  || |||||| |||||||| |||||| | ||| |||| |||||||||||| ||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  400 tc 401  Q
    ||    
T  19965404 tc 19965403  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 262 - 401
Target Start/End: Original strand, 16348412 - 16348551
Alignment:
Q  262 tacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggata 361  Q
    |||||| | ||| |||||||||||| |||||| ||   |||| ||||| |||||||||| || |  | |||||||||  |||||||||||||||||||||    
T  16348412 tacctctttcactaggatccttcttgttcacaaccaagatgattccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggata 16348511  T
Q  362 attagaaaaagtctctaccaccatgggcttggtgggaatc 401  Q
     | |||||||||||||||||||||||||||||||||||||    
T  16348512 ttcagaaaaagtctctaccaccatgggcttggtgggaatc 16348551  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 7530261 - 7530137
Alignment:
Q  275 aggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtc 374  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| |||||||||||||| || || | |||||| | || ||| |||    
T  7530261 aggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtc 7530162  T
Q  375 tctaccaccatgggcttggtgggaa 399  Q
    || ||||||||||||||||||||||    
T  7530161 tcaaccaccatgggcttggtgggaa 7530137  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 399
Target Start/End: Complemental strand, 7520723 - 7520600
Alignment:
Q  276 ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 375  Q
    ||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| ||||| |||||||| || || | |||||| | ||  || ||||    
T  7520723 ggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtct 7520624  T
Q  376 ctaccaccatgggcttggtgggaa 399  Q
    | ||||||||||||||||||||||    
T  7520623 caaccaccatgggcttggtgggaa 7520600  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 16231466 - 16231545
Alignment:
Q  282 ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggata 361  Q
    |||||||| |||| | | ||||||||||||||||||||| |||| |||||||||||||||||||| || || ||||||||    
T  16231466 ttcttctttacagacattatgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggata 16231545  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 33860137 - 33860238
Alignment:
Q  300 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa 399  Q
    ||||| |||| |||||||||| ||||  |||||||  || ||||||||||||||| |||||||| ||  |||  |||||||||||| |||||||||||||    
T  33860137 atgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa 33860236  T
Q  400 tc 401  Q
    ||    
T  33860237 tc 33860238  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 34690143 - 34690192
Alignment:
Q  300 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc 349  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  34690143 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc 34690192  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 34712555 - 34712604
Alignment:
Q  300 atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc 349  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  34712555 atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc 34712604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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