View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3416_low_4 (Length: 317)

Name: NF3416_low_4
Description: NF3416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3416_low_4
NF3416_low_4
[»] chr3 (22 HSPs)
chr3 (19-306)||(2807188-2807475)
chr3 (19-276)||(2759165-2759422)
chr3 (19-277)||(2838530-2838788)
chr3 (19-283)||(2855740-2856004)
chr3 (19-265)||(2818519-2818765)
chr3 (19-277)||(2769019-2769277)
chr3 (19-276)||(2748946-2749203)
chr3 (19-299)||(2797289-2797569)
chr3 (19-302)||(5412811-5413094)
chr3 (103-299)||(2790295-2790491)
chr3 (88-158)||(21945658-21945728)
chr3 (88-158)||(22104757-22104827)
chr3 (101-158)||(22648533-22648590)
chr3 (88-158)||(21930455-21930525)
chr3 (88-158)||(22028034-22028104)
chr3 (88-158)||(22034551-22034621)
chr3 (88-158)||(22052767-22052837)
chr3 (88-158)||(22187022-22187092)
chr3 (24-145)||(3721626-3721747)
chr3 (106-158)||(21937187-21937239)
chr3 (106-158)||(22115119-22115171)
chr3 (100-140)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (19-277)||(6082-6340)
[»] chr8 (1 HSPs)
chr8 (88-145)||(27294595-27294652)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 2807475 - 2807188
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807475 ctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 2807376  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2807375 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaat 2807276  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatgat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2807275 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatgat 2807188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 2759422 - 2759165
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    |||||||||||||||||||||||| ||||||||||  | |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  2759422 ctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttgc 2759323  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    | ||||| |||||||||||||| |||||||| ||||| ||||||  |||||||||||||||| || | | ||||||| ||||||||||||||||||||||    
T  2759322 cgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaat 2759223  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttct 276  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2759222 ttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttct 2759165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 2838530 - 2838788
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||||||||||||||||||||||| || |||||||   |||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2838530 ctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaactagcttggcaagagtggtttttc 2838629  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    ||||||| |||||||||||||| || || || |||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  2838630 ctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaat 2838729  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 277  Q
    |||| |||||||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  2838730 ttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctg 2838788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 2855740 - 2856004
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||| ||||||| ||||||||||||||| |||||||    
T  2855740 ctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaaaaattagcttggcaagagtagtttttc 2855839  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    ||| ||| |||||||| ||||| ||||||||  ||||||||| || ||| |||||||||||| |||||| ||||||| ||||||||||||  |||||||     
T  2855840 ctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctacaac 2855939  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctc 283  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2855940 ttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctc 2856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 2818765 - 2818519
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    |||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2818765 ctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggtttttc 2818666  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    ||||||| |||||||||||||| || ||||| |||||||| ||| ||||||||||||||||| || | | ||||||||| ||||||||||||||||| ||    
T  2818665 ctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgat 2818566  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatc 265  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||    
T  2818565 ttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatc 2818519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 2769277 - 2769019
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| ||  |||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  2769277 ctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcataaactagtttggcaagagtggtttttc 2769178  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    ||||||| |||||||||||||| || ||||| ||||||| |||| ||||||||||||||||| || | | |||||||||||||||||| |||||||||||    
T  2769177 ctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttgggccttccaatcctacaat 2769078  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 277  Q
    |||| ||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  2769077 ttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctg 2769019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 2749203 - 2748946
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||||||||| ||||||||||||| || ||||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||||||||||||||    
T  2749203 ctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttc 2749104  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    |||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||| ||||||  || ||||     
T  2749103 ctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggacttcaataccaacaac 2749004  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttct 276  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  2749003 ttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttct 2748946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 2797569 - 2797289
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||| | |||||||||| |||| || || ||||||||||||||||||||||||||||    
T  2797569 ctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttc 2797470  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||   ||||| | ||||||| |||||| |||||| || |||||||||||||| |||||    
T  2797469 ctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaat 2797370  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgct 299  Q
    | |  |||||||||||||||||||||||||||||||||||| |||||||| ||| || || |||||| |||||||| ||||    
T  2797369 tgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgct 2797289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 5413094 - 5412811
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    |||||||||||||||||||||||||  | ||||||||  ||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||    
T  5413094 ctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaaaaactagcttggcaagagtggtttttc 5412995  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    |||| || |||||||||||||| || || || || || || ||| |||| |||||||||||| |||||| ||||||| |||| ||||||| ||||||||     
T  5412994 ctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaac 5412895  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttga 302  Q
    |||| |||||  ||| || |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  5412894 ttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgcttga 5412811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 103 - 299
Target Start/End: Complemental strand, 2790491 - 2790295
Alignment:
Q  103 gcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggc 202  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||   ||||||||||||||| |||||| |||||| || ||||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  203 cttcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgct 299  Q
    |||||||||| |||||| |  |||||||||| |||||||||||||  ||||||||| ||||||||| ||| || || |||||| |||||||||||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgct 2790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 21945728 - 21945658
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  21945728 tcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctc 21945658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 22104827 - 22104757
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||||||||  || ||||||||    
T  22104827 tcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctc 22104757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
Q  101 tggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||||||||||||||| |||||||| |||||||| || || || ||||||||    
T  22648533 tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc 22648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 21930525 - 21930455
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  21930525 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 21930455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 22028104 - 22028034
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22028104 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 22034621 - 22034551
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| ||||||||    
T  22034621 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc 22034551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 22052837 - 22052767
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||  |||| ||| ||||||||    
T  22052837 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctc 22052767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 22187092 - 22187022
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    |||||||||  |||||| ||||| ||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  22187092 tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctc 22187022  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 3721747 - 3721626
Alignment:
Q  24 agtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctaga 123  Q
    |||||| |||||||||||||  ||| |||  | ||||||||||||  || | |||   ||| ||||||||||  |||| |||||||| |||||||| ||     
T  3721747 agtgtaggattgagaaactgttatgaaagagcagcaatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagt 3721648  T
Q  124 cctcccattcctaccaccgaaa 145  Q
    |||||||| |||||||| ||||    
T  3721647 cctcccatgcctaccacagaaa 3721626  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 21937239 - 21937187
Alignment:
Q  106 agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  21937239 agagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctc 21937187  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 22115171 - 22115119
Alignment:
Q  106 agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc 158  Q
    ||||||||||||||| | ||||||||||||||||| ||||  || ||||||||    
T  22115171 agagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctc 22115119  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
Q  100 ttggcaagagtggtttttcctagacctcccattcctaccac 140  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  22621288 ttggcaagagtggattttccttgtcctcccattcctaccac 22621328  T

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Target: scaffold0691 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 6082 - 6340
Alignment:
Q  19 ctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttc 118  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  6082 ctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggttttcc 6181  T
Q  119 ctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaat 218  Q
    ||| |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||| || | | ||| |||||||||||||| ||||||||||     
T  6182 ctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctacaac 6281  T
Q  219 ttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 277  Q
    |||  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  6282 ttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctg 6340  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 27294652 - 27294595
Alignment:
Q  88 tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa 145  Q
    |||||||||  |||| | ||||||||||||||| | ||||||||||||||||| ||||    
T  27294652 tcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaa 27294595  T

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