View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_high_11 (Length: 249)
Name: NF3417_high_11
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 480908 - 481127
Alignment:
| Q |
23 |
ttggtattggtatgtatattcaaaggttgtttgatattgtcttaaaccaaaaaagttatttggttttggctcgaacaatttagttttctcccatatattt |
122 |
Q |
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| T |
480908 |
ttggtattggtatgtatattcgaaggttgtttgatgttgccttaaaccaaaaaagttatttggtgttggctcgaacaatttagttttctcccatatattt |
481007 |
T |
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| Q |
123 |
tatggatgagagggaaaagcgtatgattttttgggtcctttgaatttaatttgttgtcttcagctgaacaatgttgattttgaactttattttaagtgga |
222 |
Q |
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| T |
481008 |
tatggatgagaggg--aagcgtatgatttgttgggtcctttgaatttaatttgttgtcttcagctgaacaatgttgattttgaactttattttaagtgga |
481105 |
T |
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| Q |
223 |
ttctttatagttttcttctctc |
244 |
Q |
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||||| ||| |||||||||||| |
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| T |
481106 |
ttcttgataattttcttctctc |
481127 |
T |
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