View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_high_2 (Length: 414)
Name: NF3417_high_2
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_high_2 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 24565240 - 24564862
Alignment:
| Q |
17 |
acatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtatatc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565240 |
acatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtatatc |
24565141 |
T |
|
| Q |
117 |
tttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565140 |
tttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaa |
24565041 |
T |
|
| Q |
217 |
aagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtg |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565040 |
aagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaatcagtttttcgatagagaaatggagacatttcggtgtctgtggcagtg |
24564941 |
T |
|
| Q |
317 |
acgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564940 |
acgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgt |
24564862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 14165020 - 14164926
Alignment:
| Q |
168 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
262 |
Q |
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||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| |||||||||||||||||| | | ||||||||||||||||||| |
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| T |
14165020 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaataggaaaggagttgagcatcaaggccacattttt |
14164926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 45532813 - 45533192
Alignment:
| Q |
19 |
atttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtat----a |
114 |
Q |
| |
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||||||||||||| |||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||| | |
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| T |
45532813 |
atttctggttcccgtcaagtatgtttttcataatcgtttatattgtatgtttttgagagaattagtttttcatatttagtcatcttaatctatatcttta |
45532912 |
T |
|
| Q |
115 |
tcttta---------------tacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggt |
199 |
Q |
| |
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||| || ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
45532913 |
tctatacattataagaaaaattacaaaggatgtgaacctttgatctgaatttttgtcattcaaatttcatccttaccaaatgatctttattacatttggt |
45533012 |
T |
|
| Q |
200 |
attgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacattt |
299 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
45533013 |
tttgtagagatagagaaaagatcaagaaataggaaaggagtggggcatcaaggccaca---------------tttttcgatggagaaatggtgacattt |
45533097 |
T |
|
| Q |
300 |
cggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgt |
395 |
Q |
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||||||| |||| ||||| ||||||||| |||||||||||| || |||||||||||||| ||||| |||||| |||| |||||||||||||| |
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| T |
45533098 |
cggtgtcggtggtagtgaagaagtcacaaagtagtcggtgcggt-aggggccaagtttctaactggaagatggcggtgattatgctatgctaacgt |
45533192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 62 - 395
Target Start/End: Complemental strand, 44339327 - 44338990
Alignment:
| Q |
62 |
tttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtat----atctttatac-------aaaggatgcggacctttgatgtgaatt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| || ||||| | ||| |||| || || |||||||| ||||||||||| | ||| |
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|
| T |
44339327 |
tttatgtttttgagagaattagtttttcatattaagtaattttaatctatatctttatctatacactataacaaaaggatgtggacctttgatttcgatt |
44339228 |
T |
|
| Q |
151 |
tttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaa |
250 |
Q |
| |
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||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||||||||||||||||||||| | | ||||| |
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|
| T |
44339227 |
tttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacagagaaaagatgaagaaataggaaaggaggggagaatcaa |
44339128 |
T |
|
| Q |
251 |
ggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggc |
350 |
Q |
| |
|
||||||||||||||||| | | ||| | ||||||||| | ||||||||||| ||||| ||| ||||||||| |||||||| |||||| ||||| |
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| T |
44339127 |
ggccacatttttcatcagcaactttattgatagagaagtcgagacatttcg------gtggctttgaagaagtcacaaagtagtcgatgcagt-ggggga |
44339035 |
T |
|
| Q |
351 |
caagtttcttactgggagatggtggtggacgtgctatgctaacgt |
395 |
Q |
| |
|
||||||| | || |||||||| |||||||||||||||||||||| |
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| T |
44339034 |
caagtttttaaccaggagatggcggtggacgtgctatgctaacgt |
44338990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 124 - 395
Target Start/End: Original strand, 44335720 - 44335984
Alignment:
| Q |
124 |
aaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatga |
223 |
Q |
| |
|
|||||||| ||||||||||| | |||||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||||| |
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|
| T |
44335720 |
aaaggatgtggacctttgattttgatttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacggagaaaagatga |
44335819 |
T |
|
| Q |
224 |
agaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagt |
323 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| | | ||| | ||||||||| | ||||||||||||| || ||| ||||| |
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|
| T |
44335820 |
agaaataggaaaggaggggagcatcaaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggtaact------ttgaagaagt |
44335913 |
T |
|
| Q |
324 |
cacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgt |
395 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||||| | || ||||||| ||||||||||||||||||||||| |
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|
| T |
44335914 |
cacaaagtagtcggtgc-gatgggggacaagtttttaaccaggagatgatggtggacgtgctatgctaacgt |
44335984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 388
Target Start/End: Original strand, 29633314 - 29633561
Alignment:
| Q |
133 |
ggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaatagg |
232 |
Q |
| |
|
|||||||| || || |||||| |||||| |||| || |||| | ||||||| |||||||| ||||| ||| |||| | |||||| || |||||||||| |
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|
| T |
29633314 |
ggacctttaatctggatttttatcattccaattctattcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaatagg |
29633413 |
T |
|
| Q |
233 |
aaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagta |
332 |
Q |
| |
|
||| || ||||| ||||| |||| ||||||| | |||||||| |||||| ||||||| || |||| | |||||||||| ||| ||||| || | |
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|
| T |
29633414 |
aaacgagtagggtatcaatgccatgtttttcaactgccagttttgcgatagggaaatggggatattttg------gtggcagtgaagaaatcacaaagca |
29633507 |
T |
|
| Q |
333 |
gtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatg |
388 |
Q |
| |
|
||||||||| |||||| |||||| | ||| |||||||| ||||| | ||||||| |
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|
| T |
29633508 |
gtcggtgca--tgggggctaagtttttaactaggagatggcggtggtcctgctatg |
29633561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 40389260 - 40389416
Alignment:
| Q |
148 |
atttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcat |
247 |
Q |
| |
|
|||||| |||||| |||| || |||| | ||||||| |||||||| ||| | ||| |||| | |||||| || ||||||||||||| || ||||| || |
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|
| T |
40389260 |
atttttatcattccaattctattcttagcaagtgatcgttattacacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtat |
40389359 |
T |
|
| Q |
248 |
caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
304 |
Q |
| |
|
||| |||| ||||||| | |||||||| ||||| ||||||| ||||||| |||| |
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|
| T |
40389360 |
caatgccatgtttttcaactgccagttttgcgatatggaaatggggacattttggtg |
40389416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 44335647 - 44335679
Alignment:
| Q |
62 |
tttatgtttttgagagaattagtttttcatatt |
94 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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|
| T |
44335647 |
tttatgtttttgagagaattaatttttcatatt |
44335679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 19190105 - 19190196
Alignment:
| Q |
17 |
acatttctggttcccttcaagtatgtttttc-agaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190105 |
acatttctggttcccttcaagtatgtttttttagaattgtttatattttatgtttttgagagaattagtttttcatatttagtcatcttaat |
19190196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 16257 - 16351
Alignment:
| Q |
168 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
262 |
Q |
| |
|
||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||| | | ||||||||||||||||||| |
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|
| T |
16257 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaatagaaaaggagttgagcatcaaggccacattttt |
16351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 23096260 - 23096176
Alignment:
| Q |
178 |
agtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
262 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
23096260 |
agtgatcattattacacttggttttgaagagatggagaaaaggtgaagaaataggaaaggggtggggcatcaaggctacattttt |
23096176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 24867524 - 24867465
Alignment:
| Q |
179 |
gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaagga |
238 |
Q |
| |
|
||||| ||||||| | ||||| ||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
24867524 |
gtgatttttattagacttggttttgtagagacagtgaaaagaagaagaaataggaaagga |
24867465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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