View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_high_6 (Length: 261)
Name: NF3417_high_6
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 10293350 - 10293510
Alignment:
| Q |
18 |
atcaaaattgttaacaaaagttgaactttgaaattgacatataagtagttacgtatttactctaaaaaacaaacaattagtaatagactaataggtgttt |
117 |
Q |
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| T |
10293350 |
atcaaaattgttaacaaaagttgaactttgaaattgacatataagtagttacatatttactctaaaaaacaaacaattagtaatagactaataggtgttt |
10293449 |
T |
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| Q |
118 |
ttctaccnnnnnnnngtctaatataggtgtttatgtactcaaactttaaattatttacaaa |
178 |
Q |
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| T |
10293450 |
ttctaccaaaaaaaagtataatataggtgtttatgtacgcaaactttaaattatttacaaa |
10293510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 10293529 - 10293559
Alignment:
| Q |
205 |
acaaatgagtccctatattcattgattatat |
235 |
Q |
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| T |
10293529 |
acaaatgagtccctatattcattgattatat |
10293559 |
T |
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