View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_high_8 (Length: 251)
Name: NF3417_high_8
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 480558 - 480741
Alignment:
| Q |
68 |
atgtcaaaatataccgtattatgcagagagaggaaggatcaatgcttaagtgatttcttcaacctaattgttaaaatatatattcaaaatgctctcgcaa |
167 |
Q |
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| T |
480558 |
atgtcaaaatataccgtattatgcagagagaggaaggatcaatgcttaagtgatttcttcaacctaattgttaaaatatatattcaaaatgctctcgcaa |
480657 |
T |
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| Q |
168 |
caattatgaaattttcaagcaagcatattctcatataaactaaaattataacatcccaattttgttaaataaaaacagtgactt |
251 |
Q |
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| T |
480658 |
caattatgaatttttcaagcaagcatattctcatataaattaaaattataacatcccaattttgttaaataaaaacggtgactt |
480741 |
T |
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