View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_low_1 (Length: 468)
Name: NF3417_low_1
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 193 - 452
Target Start/End: Original strand, 3524357 - 3524618
Alignment:
| Q |
193 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctctttggtacataatactatgtttactcttcaaaagcaac |
292 |
Q |
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| T |
3524357 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctctttggtacataatactatgtttactcttcaaaagcaac |
3524456 |
T |
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| Q |
293 |
caaagatccgannnnnnnncaaacctaagacctcctctttagtaagaccctcttattcatat--ttgaagtctagagttgctatatacgtcaagcccatt |
390 |
Q |
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| T |
3524457 |
caaagatccgattttttttcaaacctaagacctcctctttagtaagaccctcttattcatatatttgaagtctagagttgctatatacgtcaagcccatt |
3524556 |
T |
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| Q |
391 |
gattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
452 |
Q |
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| T |
3524557 |
gattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
3524618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 3522963 - 3523129
Alignment:
| Q |
13 |
attttgaacctcattcaaagaagcaaagattactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctct |
112 |
Q |
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| T |
3522963 |
attttgaacctcattcaaagaagcaaagactactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctct |
3523062 |
T |
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| Q |
113 |
tgtcttatagtcgatggaagatgaagtcatgaaccttctgatttgagaaccgaactagtttttgatg |
179 |
Q |
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| T |
3523063 |
tgtcttatagtcgatgaaagatgaagtcatgaaccttctgatttgagaaccgaactagtttttgatg |
3523129 |
T |
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