View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_low_12 (Length: 249)
Name: NF3417_low_12
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 39469910 - 39469679
Alignment:
| Q |
18 |
ttaagtatcttgatttagcagtagcaaatcttggtggtgagattccagaagaattaggaaatctcaagttattggatacacttttcttatacaacaacaa |
117 |
Q |
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| T |
39469910 |
ttaagtatcttgatttagcagtagcaaatcttggtggtgagattccagaggaattaggaaatctcaagttattggatacacttttcttatacaacaacaa |
39469811 |
T |
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| Q |
118 |
tcttgaaggaagaattccatcacaaattggtaacattacttctttgcagtttttagatctttctgataacaatttgtcaggaaaaattccagatgaaatg |
217 |
Q |
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| T |
39469810 |
tcttgaaggaagaattccttcacaaattggtaacattacttctttgcagtttttagatctttctgataacaatttgtcaggaaaaattccagatgaaatg |
39469711 |
T |
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| Q |
218 |
agtcttctgaagaatttgaagcttctgaactt |
249 |
Q |
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| T |
39469710 |
agtcttctgaagaatttgaagcttctgaactt |
39469679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 30088043 - 30088272
Alignment:
| Q |
20 |
aagtatcttgatttagcagtagcaaatcttggtggtgagattccagaagaattaggaaatctcaagttattggatacacttttcttatacaacaacaatc |
119 |
Q |
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||||||||||||||||||| || ||| |||||||||| ||||| || || || ||||| |||||||||||| | ||| ||||||||||||| |||| | |
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| T |
30088043 |
aagtatcttgatttagcagaaggcaatgttggtggtgaaattcctgatgagttgggaaaactcaagttattgaacacagttttcttatacaagaacagtt |
30088142 |
T |
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| Q |
120 |
ttgaaggaagaattccatcacaaattggtaacattacttctttgcagtttttagatctttctgataacaatttgtcaggaaaaattccagatgaaatgag |
219 |
Q |
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| T |
30088143 |
ttgaaggcaagattccaacaaatattggaaacatgacttcattggtgctgcttgatctctcagacaacatgttatcaggaaatattccagctgaaataag |
30088242 |
T |
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| Q |
220 |
tcttctgaagaatttgaagcttctgaactt |
249 |
Q |
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| T |
30088243 |
tcagctaaagaatttgcagcttctgaactt |
30088272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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