View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3417_low_15 (Length: 237)

Name: NF3417_low_15
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3417_low_15
NF3417_low_15
[»] chr5 (13 HSPs)
chr5 (16-218)||(30712253-30712455)
chr5 (16-218)||(30484480-30484682)
chr5 (18-218)||(30337350-30337550)
chr5 (16-218)||(30676113-30676315)
chr5 (19-214)||(30436895-30437090)
chr5 (18-218)||(30061453-30061653)
chr5 (18-218)||(30750727-30750927)
chr5 (18-218)||(29873255-29873455)
chr5 (18-136)||(29854392-29854510)
chr5 (18-74)||(30401155-30401211)
chr5 (21-79)||(30520589-30520647)
chr5 (21-79)||(30560929-30560987)
chr5 (18-79)||(30207603-30207664)
[»] chr4 (1 HSPs)
chr4 (16-218)||(20295407-20295609)
[»] chr7 (1 HSPs)
chr7 (16-214)||(26708411-26708609)
[»] chr1 (2 HSPs)
chr1 (18-79)||(7100502-7100563)
chr1 (18-79)||(7580683-7580744)
[»] chr3 (1 HSPs)
chr3 (18-79)||(25292911-25292972)
[»] scaffold0144 (1 HSPs)
scaffold0144 (43-83)||(37957-37997)
[»] chr6 (2 HSPs)
chr6 (43-83)||(16797639-16797679)
chr6 (43-83)||(16987927-16987967)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 30712455 - 30712253
Alignment:
Q  16 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  30712455 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcattgtctcttcccagcgcttttgattcaagaggggtggagctgg 30712356  T
Q  116 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  30712355 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30712256  T
Q  216 tgt 218  Q
    |||    
T  30712255 tgt 30712253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 30484480 - 30484682
Alignment:
Q  16 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctgg 115  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30484480 atgaagttagagtccttcgcataggtgagaagaaactcgacaatcttttctttatcatcgtctcttcctaatgcttttgattcaagaggggtggagctgg 30484579  T
Q  116 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcct 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| | ||||||||||| ||||||||||||    
T  30484580 tttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctcct 30484679  T
Q  216 tgt 218  Q
    |||    
T  30484680 tgt 30484682  T

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Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 30337550 - 30337350
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggtt 117  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| | |||| ||| ||| |||||| ||||  |    |||||| ||||    
T  30337550 gaagtcagagtccttcgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtt 30337451  T
Q  118 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctccttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30337450 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttg 30337351  T
Q  218 t 218  Q
    |    
T  30337350 t 30337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 30676315 - 30676113
Alignment:
Q  16 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |||| ||| ||| |||||||||||  |    | |||| ||    
T  30676315 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgattcagcaataattgagccgg 30676216  T
Q  116 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  30676215 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 30676116  T
Q  216 tgt 218  Q
    |||    
T  30676115 tgt 30676113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 30436895 - 30437090
Alignment:
Q  19 aagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggttt 118  Q
    |||||||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  30436895 aagtcagagtccttcgcaagggtaagaagaaactggacaatcttttctttatcatcgtctcttcctaacacttttgtttcaagaggggtggagctggttt 30436994  T
Q  119 ggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcc 214  Q
    |||||||||||||  ||||||||||| |||||||||||||| ||||| | || ||||||||| ||||||||||||||||||||  ||| |||||||    
T  30436995 ggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctcc 30437090  T

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Target: chr5; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 30061453 - 30061653
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggtt 117  Q
    ||||||||||||| | || ||||||||||||||||| ||||||| |||||||||| | |||| ||| ||| |||||| ||||  |    |||||| ||||    
T  30061453 gaagtcagagtcccttgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtt 30061552  T
Q  118 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctccttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  30061553 tggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttg 30061652  T
Q  218 t 218  Q
    |    
T  30061653 t 30061653  T

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Target: chr5; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 30750727 - 30750927
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggtt 117  Q
    ||||||||||||| | || |||||||||||||||||  |||||| |||||||||| | |||| ||| ||| |||||| ||||  |    |||||| ||||    
T  30750727 gaagtcagagtcccttgcttgggtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtt 30750826  T
Q  118 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctccttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  30750827 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttg 30750926  T
Q  218 t 218  Q
    |    
T  30750927 t 30750927  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 29873255 - 29873455
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggtt 117  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||| ||| ||  |||||| ||||| |    |||||||||||    
T  29873255 gaagtcagagtccctcgcttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaacaataatggagctggtt 29873354  T
Q  118 tggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctccttg 217  Q
    || |||| ||||||||||| || || | ||||| ||| | |   ||||  | ||||| ||||| |||||||||  |||||||||| ||| || |||||||    
T  29873355 tgacgccattcagctacttcatttgagctttccttaacaatagtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttg 29873454  T
Q  218 t 218  Q
    |    
T  29873455 t 29873455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 29854392 - 29854510
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctggtt 117  Q
    |||||| |||||| |||  ||||||||||||||||| ||||||| |||||||||||| |||| ||| ||| |||||| ||||  |    |||||||||||    
T  29854392 gaagtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagcaataatggagctggtt 29854491  T
Q  118 tggcgcccttcagctactt 136  Q
    || |||| |||||||||||    
T  29854492 tgacgccattcagctactt 29854510  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30401155 - 30401211
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatc 74  Q
    ||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||    
T  30401155 gaagtcagagtccctcgcatgggtgagaagaaactcaaaaatcttttctttatcatc 30401211  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 30520647 - 30520589
Alignment:
Q  21 gtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    ||||||| |||| || |||||||||||||||||||||||||  ||||||||||| ||||    
T  30520647 gtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctc 30520589  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 30560987 - 30560929
Alignment:
Q  21 gtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    ||||||| |||| || |||||||||||||||||||||||||  ||||||||||| ||||    
T  30560987 gtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctc 30560929  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 30207603 - 30207664
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    |||||| |||||| |||| ||||||||||||||||||| |||||  ||||||||||| ||||    
T  30207603 gaagtcggagtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctc 30207664  T

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Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 20295609 - 20295407
Alignment:
Q  16 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  20295609 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttttttatcatcgtctcttcccaatgcttttgattcaagaggggtggagctgg 20295510  T
Q  116 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  20295509 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct 20295410  T
Q  216 tgt 218  Q
    |||    
T  20295409 tgt 20295407  T

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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 26708411 - 26708609
Alignment:
Q  16 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctcttcctaacgcttttgattcaagaggggtggagctgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26708411 atgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcatcgtctcttcccaacgcttttgtttcaagaggggtggagctgg 26708510  T
Q  116 tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacatgttcttacgttcagcaatattatctaacctcc 214  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  ||| |||||||    
T  26708511 tttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctcc 26708609  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 7100502 - 7100563
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    ||||||||||||||| || ||||||||||||||||| |||||||  ||||||||||| ||||    
T  7100502 gaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatcttctc 7100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 7580744 - 7580683
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    |||||| |||||| |||| ||||||||||||||||| ||||||   ||||||||||| ||||    
T  7580744 gaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctc 7580683  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 25292972 - 25292911
Alignment:
Q  18 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatctgttctttatcatcgtctc 79  Q
    ||||||||||||| | || ||||| ||||||||||||||| |||  ||||||||||| ||||    
T  25292972 gaagtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctc 25292911  T

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Target: scaffold0144 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 37957 - 37997
Alignment:
Q  43 agaagaaactcgacaatctgttctttatcatcgtctcttcc 83  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  37957 agaagaaactctacaatctgttctttatctttgtctcttcc 37997  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 16797639 - 16797679
Alignment:
Q  43 agaagaaactcgacaatctgttctttatcatcgtctcttcc 83  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  16797639 agaagaaactctacaatctgttctttatctttgtctcttcc 16797679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 16987927 - 16987967
Alignment:
Q  43 agaagaaactcgacaatctgttctttatcatcgtctcttcc 83  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  16987927 agaagaaactctacaatctgttctttatctttgtctcttcc 16987967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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