View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3417_low_3 (Length: 400)
Name: NF3417_low_3
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 24189738 - 24189366
Alignment:
| Q |
11 |
atcatcatttagaattggagacttttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaac |
110 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24189738 |
atcatcatttagaattggacactttgttgataaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaac |
24189639 |
T |
|
| Q |
111 |
catgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24189638 |
catgtttggatattcaatcaactcagctttttttccacattttttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaaca |
24189539 |
T |
|
| Q |
211 |
aaaacaagcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggtaaaa |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
24189538 |
aaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctctggtaaaa |
24189439 |
T |
|
| Q |
311 |
acactttccacatccaatcagtccttgccactgacacaaacggcatcccaactaggcgaatctccgcctccgt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24189438 |
acactttccacatccaatcagtccttgccactgacacaaacggcatcccaactaggcgaatctctgcctccgt |
24189366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 24179931 - 24179560
Alignment:
| Q |
12 |
tcatcatttagaattggagacttttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaacc |
111 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24179931 |
tcatcatttagaattggacactttgttgataaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaacc |
24179832 |
T |
|
| Q |
112 |
atgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaacaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24179831 |
atgtttggatattcaatcaactcagcttttttcccacattttttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaacaa |
24179732 |
T |
|
| Q |
212 |
aaacaagcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggtaaaaa |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
24179731 |
aaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcgggccgcatacattaaccgcaccatgatcccggtccgatccctctggtaaaaa |
24179632 |
T |
|
| Q |
312 |
cactttccacatccaatcagtccttgccactgacacaaacggcatcccaactaggcgaatctccgcctccgt |
383 |
Q |
| |
|
|||||||| ||||| || ||| ||||||| |||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
24179631 |
tactttccagatccagtcggtctttgccaccgacacaaatggcatcccaactaggttaatctccgcctccgt |
24179560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 24113381 - 24113052
Alignment:
| Q |
11 |
atcatcatttagaattggagacttttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaac |
110 |
Q |
| |
|
||||| || |||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||| |||||| |
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|
| T |
24113381 |
atcataatctagaattggacactttgctgatgaaatccttgacttgcataatcaactgaccagattcaggcaaatcaggaaaaatataaaaagcatgaat |
24113282 |
T |
|
| Q |
111 |
catgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaaca |
210 |
Q |
| |
|
||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| | |
|
|
| T |
24113281 |
catatttggatattgaattaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcatttaaaggatcaaatccaccaata |
24113182 |
T |
|
| Q |
211 |
aaaacaagcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggtaaaa |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24113181 |
aaaacaagcgtatccggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtctgatccctccggtaaaa |
24113082 |
T |
|
| Q |
311 |
acactttccacatccaatcagtccttgcca |
340 |
Q |
| |
|
|| |||||||||||||||| ||||| |||| |
|
|
| T |
24113081 |
acgctttccacatccaatccgtcctcgcca |
24113052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 24169490 - 24169171
Alignment:
| Q |
17 |
atttagaattggagacttttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaaccatgtt |
116 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||||| ||| || |
|
|
| T |
24169490 |
atttagaaccggagactttgttgacaaactccttgacttgcacaatcaactgagtagattcaggcaaatcaggaaaaatataaaaagcatgaatcatatt |
24169391 |
T |
|
| Q |
117 |
tggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaacaaaaaca |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
24169390 |
tggatattgaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcatttaaaggatcaaatccaccaataaaaaca |
24169291 |
T |
|
| Q |
217 |
agcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggtaaaaacactt |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||| || ||||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
24169290 |
agcgtatccggataatccaaacccgacaaatcctccgcattcggcccgcttacattaacagcaccatgatcccggttcgatccctccggtcaaaacacct |
24169191 |
T |
|
| Q |
317 |
tccacatccaatcagtcctt |
336 |
Q |
| |
|
||||| |||||| |||||| |
|
|
| T |
24169190 |
tccaccaccaatccgtcctt |
24169171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 24152669 - 24152326
Alignment:
| Q |
11 |
atcatcatttagaattggagacttttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccatgaac |
110 |
Q |
| |
|
||||| || |||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |||| ||||||| |
|
|
| T |
24152669 |
atcataatctagaattggacactttgctgatgaaatccttgacttgcataatcaattgagtagattcaggcaaatcaggaaaaatataaaaaacatgaac |
24152570 |
T |
|
| Q |
111 |
catgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccaccaaca |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
24152569 |
catgtttgggtattcaatcaactcagctttttttccacattttttcaaccaattataatacctcttttgccaatcatttaaaggatcaaacccaccaata |
24152470 |
T |
|
| Q |
211 |
aaaacaagcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggtaaaa |
310 |
Q |
| |
|
||||||| ||| || ||| ||||||||||||| ||||||||||| |||||||| | ||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
24152469 |
aaaacaatcgtctccggaaaatccaaacccgataaatcctccgcattcggcccgcttacattaacggcgccatgatcccggtttgatccctccggtaaaa |
24152370 |
T |
|
| Q |
311 |
acactttccacatccaatcagtccttgccactgacacaaacggc |
354 |
Q |
| |
|
|||| |||||| |||||| |||||||||| ||||| |||||| |
|
|
| T |
24152369 |
acaccttccaccaccaatccgtccttgccatagacaccaacggc |
24152326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 24108260 - 24107927
Alignment:
| Q |
10 |
catcatcatttagaattggagact---tttttgacaaaatccttgacttgcataatcaactgagtagattcaggaaaatcaggaaaaacatgaaaaccat |
106 |
Q |
| |
|
||||||||| || ||||||||||| || |||| |||||| |||| ||||| |||||| |||| || || |||| || |||||| ||| |||||||| |
|
|
| T |
24108260 |
catcatcatataaaattggagactctattgttgataaaatctttgatttgcaaaatcaattgagaagcctcgggaacattaggaaacgcataaaaaccat |
24108161 |
T |
|
| Q |
107 |
gaaccatgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatcaaacccacc |
206 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||||| ||| || | |||||||| |||||||||||||||||||||||| || || |||||||| |
|
|
| T |
24108160 |
gcatcatgtttggatattcaatcaactgagctttttttccagatattttcaaccattcataatacctcttttgccaatcatataacccgtccaacccacc |
24108061 |
T |
|
| Q |
207 |
aacaaaaacaagcgtatcaggataatccaaacccgacaaatcctccgcgttcggcccacatacattaaccgcgccatgatcccggtccgatccctccggt |
306 |
Q |
| |
|
||||||||||||||||| |||||||| || | || ||||||||||| |||||||||| |||||| | ||| ||||| |||| ||| ||||| || |
|
|
| T |
24108060 |
cacaaaaacaagcgtatctggataatctaatcgggataaatcctccgcattcggcccactaacattagctgcgttgtgatctcggttcgaaccctctggc |
24107961 |
T |
|
| Q |
307 |
aaaaacactttccacatccaatcagtccttgcca |
340 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |
|
|
| T |
24107960 |
aaaaacaccttccacatccaatctgtcctcgcca |
24107927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 24214589 - 24214453
Alignment:
| Q |
99 |
aaaaccatgaaccatgtttggatattcaatcaactcagcttttttcccacatttcttcaaccaatcataatacctcttttgccaatcaatcaaaggatca |
198 |
Q |
| |
|
|||| |||||||||||||||||||||| || | | ||| ||| ||| |||| ||||||| ||||||||||||||||||||||| | || || ||| |
|
|
| T |
24214589 |
aaaagcatgaaccatgtttggatattctattagttgcacttcttttccagattttctcaaccactcataatacctcttttgccaatctactaacgggtca |
24214490 |
T |
|
| Q |
199 |
aacccaccaacaaaaacaagcgtatcaggataatcca |
235 |
Q |
| |
|
||||||||||| | || || |||| |||||||||| |
|
|
| T |
24214489 |
cacccaccaacacacaccagagtattcggataatcca |
24214453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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