View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3417_low_5 (Length: 312)
Name: NF3417_low_5
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 30337410 - 30337105
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337410 |
ttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
30337311 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337310 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
30337211 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337210 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagcttttgag |
30337111 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30337110 |
cctttg |
30337105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 30712313 - 30712008
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
30712313 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacat |
30712214 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712213 |
gatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
30712114 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712113 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagcttttgaa |
30712014 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30712013 |
cctttg |
30712008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 30484625 - 30484927
Alignment:
| Q |
4 |
cacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgat |
103 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
30484625 |
cacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccaatctcatggcgaaacatgat |
30484724 |
T |
|
| Q |
104 |
gttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484725 |
gttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtct |
30484824 |
T |
|
| Q |
204 |
tgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484825 |
tgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagctttgatgtgaactaagttgtctgatagcttttgagcct |
30484924 |
T |
|
| Q |
304 |
ttg |
306 |
Q |
| |
|
||| |
|
|
| T |
30484925 |
ttg |
30484927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30750867 - 30751172
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
30750867 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccaatctcatggcgaaacat |
30750966 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750967 |
gatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
30751066 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30751067 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgcgaactaagttgtctgatagcttttgag |
30751166 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30751167 |
cctttg |
30751172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 30061595 - 30061898
Alignment:
| Q |
3 |
ccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |
|
|
| T |
30061595 |
ccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttaccaatctcatggcgaaacatga |
30061694 |
T |
|
| Q |
103 |
tgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30061695 |
tgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtactcatcaaggatatcatcgagcacataaacaccatctttgaggtc |
30061794 |
T |
|
| Q |
203 |
ttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
30061795 |
ttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaacc |
30061894 |
T |
|
| Q |
303 |
tttg |
306 |
Q |
| |
|
|||| |
|
|
| T |
30061895 |
tttg |
30061898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 30676173 - 30675868
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| | |
|
|
| T |
30676173 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgccgatctcactgcgaaacat |
30676074 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676073 |
gatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatactcatcaaggatatcatcgagcacataaacagcatctttgagg |
30675974 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30675973 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtttgatagcttttgaa |
30675874 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
30675873 |
cctttg |
30675868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 29854544 - 29854802
Alignment:
| Q |
13 |
gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttgg |
112 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
29854544 |
gtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttgg |
29854643 |
T |
|
| Q |
113 |
tttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccat |
212 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
29854644 |
tttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccat |
29854743 |
T |
|
| Q |
213 |
agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
271 |
Q |
| |
|
| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
29854744 |
accttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgat |
29854802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 29873407 - 29873665
Alignment:
| Q |
13 |
gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttgg |
112 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |
|
|
| T |
29873407 |
gtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttgg |
29873506 |
T |
|
| Q |
113 |
tttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccat |
212 |
Q |
| |
|
||| |||||| | ||||||| ||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||| |
|
|
| T |
29873507 |
tttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccat |
29873606 |
T |
|
| Q |
213 |
agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
271 |
Q |
| |
|
| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29873607 |
accttaatagagcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgat |
29873665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 30437048 - 30437324
Alignment:
| Q |
15 |
agagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtt |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
30437048 |
agagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaacttta------------ |
30437135 |
T |
|
| Q |
115 |
tgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatag |
214 |
Q |
| |
|
|||| || ||| ||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30437136 |
---aagatgtgaattttctcagtcgactagacttgatcgaacactcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccatac |
30437232 |
T |
|
| Q |
215 |
cttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
306 |
Q |
| |
|
|||||| || ||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||| || |||||| |||| |||||||| |
|
|
| T |
30437233 |
cttaatgaagttgtctttgacttgtctcttttcagcatcttcaagaacagccttgatgtcaactaaggtggttgataggttttcagcctttg |
30437324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 30401321 - 30401572
Alignment:
| Q |
24 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
123 |
Q |
| |
|
||||||||| | |||||||||||||| || || ||||||||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
30401321 |
ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagaga |
30401420 |
T |
|
| Q |
124 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
223 |
Q |
| |
|
| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| | |
|
|
| T |
30401421 |
atgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatata |
30401520 |
T |
|
| Q |
224 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtga |
275 |
Q |
| |
|
| ||||||| |||| |||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
30401521 |
gctgtctttgacttgtctcttctcagcatctacaagaacagcctcgatgtga |
30401572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 30207762 - 30208012
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || || |||||| | | ||| |||||||||||||||||||| |
|
|
| T |
30207762 |
aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa |
30207861 |
T |
|
| Q |
120 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
219 |
Q |
| |
|
|| | | | | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| | |
|
|
| T |
30207862 |
gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta |
30207961 |
T |
|
| Q |
220 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttga |
270 |
Q |
| |
|
||||| | | ||| ||| |||| ||||||||||||||||| ||| |||| |
|
|
| T |
30207962 |
tagagcgattgatgacttgcttctgctcagcatcttcaagaacagcgttga |
30208012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 30241245 - 30240973
Alignment:
| Q |
19 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
118 |
Q |
| |
|
||||||| ||| | || |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30241245 |
aaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag--------------- |
30241161 |
T |
|
| Q |
119 |
agaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
218 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |||| |
|
|
| T |
30241160 |
agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccatacctta |
30241061 |
T |
|
| Q |
219 |
atagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
306 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||| || ||||| | ||||| ||||||| |||||||||||||||| |
|
|
| T |
30241060 |
atagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttg |
30240973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 17417509 - 17417283
Alignment:
| Q |
45 |
tcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag |
144 |
Q |
| |
|
||||| || |||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||| ||| | ||||| || |||| || |
|
|
| T |
17417509 |
tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag |
17417410 |
T |
|
| Q |
145 |
actcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttctt |
244 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||| |||||||||| | ||| | ||||| ||| ||||| | ||| ||| |||||| | |
|
|
| T |
17417409 |
actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatg |
17417310 |
T |
|
| Q |
245 |
ctcagcatcttcaagaatagccttgat |
271 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
17417309 |
ctcagcatcttcaagaacagccttgat |
17417283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 30329700 - 30329426
Alignment:
| Q |
24 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
123 |
Q |
| |
|
||||||||| |||||||||| | |||||| || || ||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30329700 |
ttgttcttattttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagagg |
30329604 |
T |
|
| Q |
124 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
223 |
Q |
| |
|
| ||||| | ||||| |||||||||| || ||||||||||||||||||| |||||||| | | ||||||||| | ||| | ||||| ||||||||| |
|
|
| T |
30329603 |
atgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaataga |
30329504 |
T |
|
| Q |
224 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagc |
301 |
Q |
| |
|
| | ||| || ||| || | |||| |||||||||||| | ||||||| || ||||| || ||||||||||||||| |
|
|
| T |
30329503 |
gcggtctgagacttgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttgatagcttttgagc |
30329426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 30476615 - 30476866
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
119 |
Q |
| |
|
|||||||| |||||||||||||| | ||| || ||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| | |||||| |
|
|
| T |
30476615 |
aaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaa |
30476714 |
T |
|
| Q |
120 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
219 |
Q |
| |
|
||| | || | |||| || ||| || || || | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| ||||| |
|
|
| T |
30476715 |
caggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaa |
30476814 |
T |
|
| Q |
220 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
271 |
Q |
| |
|
||||| | ||| ||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30476815 |
tagagcggtctgtgacctgtttctgctcagcatcttcaagaacagccttgat |
30476866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 16415393 - 16415432
Alignment:
| Q |
232 |
tgaattgtttcttctcagcatcttcaagaatagccttgat |
271 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16415393 |
tgaattgtttctcctcagcatcttcaagagtagccttgat |
16415432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 29608394 - 29608335
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgtt |
79 |
Q |
| |
|
|||||| |||||||||||| ||| | ||| || |||||||||||||||||||||||||| |
|
|
| T |
29608394 |
aaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgtt |
29608335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 30520322 - 30520207
Alignment:
| Q |
189 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg |
288 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| | ||||| || || |
|
|
| T |
30520322 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg |
30520223 |
T |
|
| Q |
289 |
atagcttttgagcctt |
304 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
30520222 |
atagctttagagcctt |
30520207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 30560662 - 30560547
Alignment:
| Q |
189 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg |
288 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| | ||||| || || |
|
|
| T |
30560662 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg |
30560563 |
T |
|
| Q |
289 |
atagcttttgagcctt |
304 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
30560562 |
atagctttagagcctt |
30560547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30520491 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30520401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30560831 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30560741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 20295467 - 20295162
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
20295467 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttaaacctgctaccgatctcatggcgaaacgc |
20295368 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20295367 |
gatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtactcatcaaggatatcaccgagcacataaacagcatctttgagg |
20295268 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20295267 |
tcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagcatcttcaagaacagccttgatgtgaactaagttgtctgatagctttcgag |
20295168 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
20295167 |
cctttg |
20295162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 52353201 - 52353453
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
119 |
Q |
| |
|
|||||||||||| |||||||||| | ||| || ||||||||||| |||||||| ||||| || || ||||| |||||| || || ||||||||||| |
|
|
| T |
52353201 |
aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat |
52353300 |
T |
|
| Q |
120 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
219 |
Q |
| |
|
|| | || || | ||||||| ||| | |||||| | |||||||||||||||||||| || ||||||||||||||||| | || | ||||| |||| |
|
|
| T |
52353301 |
gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaa |
52353400 |
T |
|
| Q |
220 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatg |
272 |
Q |
| |
|
||||| | ||| ||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52353401 |
tagagcggtctgtgacttgtttctgctcagcatcttcaagaactgccttgatg |
52353453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 25292813 - 25292566
Alignment:
| Q |
20 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
119 |
Q |
| |
|
||||||||||||| || ||||||||||||| || ||||||||||||||||||||| |||| || || | |||| ||||| |||||||||||||||||||| |
|
|
| T |
25292813 |
aaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaa |
25292714 |
T |
|
| Q |
120 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
219 |
Q |
| |
|
|||| | ||||| ||||||| ||| | |||| | |||||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| ||||| |
|
|
| T |
25292713 |
gaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaa |
25292614 |
T |
|
| Q |
220 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagcct |
267 |
Q |
| |
|
||||| | ||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
25292613 |
tagagcgatctgtgacttgtttctgctcagcatcttcaagaacagcct |
25292566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 26708553 - 26708843
Alignment:
| Q |
1 |
ttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaactt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26708553 |
ttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgatcttatggcgaaac-- |
26708650 |
T |
|
| Q |
101 |
gatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgagg |
200 |
Q |
| |
|
|| |||||||| ||| | ||||||||| ||||| ||||||| | ||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
26708651 |
-------------tttaaagaggtgaattttttcagtcgactagacttgatcgagcattcatcaaggatgtcatcgagcacatatacaacatctttgagg |
26708737 |
T |
|
| Q |
201 |
tcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgag |
300 |
Q |
| |
|
||||||| ||||| ||||||| || ||| ||| |||| ||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||| || |
|
|
| T |
26708738 |
tcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagcatcttcaagaacggccctaatgtcaactaaggtggttgataggttttcag |
26708837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 7100785 - 7100894
Alignment:
| Q |
159 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
258 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| | || | ||||| | ||||||| | ||| | ||||| ||||| ||||| ||||||| |
|
|
| T |
7100785 |
tcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa |
7100884 |
T |
|
| Q |
259 |
gaatagcctt |
268 |
Q |
| |
|
||| |||||| |
|
|
| T |
7100885 |
gaacagcctt |
7100894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 306
Target Start/End: Complemental strand, 7580457 - 7580308
Alignment:
| Q |
157 |
actcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttc |
256 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| | || ||||||| | |||||| | || | ||||| ||||| ||||| |||| |
|
|
| T |
7580457 |
actcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttcttttcagcgtcttg |
7580358 |
T |
|
| Q |
257 |
aagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
306 |
Q |
| |
|
||||| ||||||||| | ||||| | |||||||||||||||||||| |
|
|
| T |
7580357 |
aagaacagccttgatcagttctaaggttcttgatagcttttgagcctttg |
7580308 |
T |
|
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