View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3417_low_6 (Length: 297)
Name: NF3417_low_6
Description: NF3417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3417_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39469690 - 39469407
Alignment:
| Q |
1 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
100 |
Q |
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| T |
39469690 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
39469591 |
T |
|
| Q |
101 |
tcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
200 |
Q |
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| T |
39469590 |
tcaggtccattgcctagtaacctcggcgagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
39469491 |
T |
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| Q |
201 |
gcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtgttcatctc |
284 |
Q |
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| T |
39469490 |
gcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtgttcttctc |
39469407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 30088261 - 30088530
Alignment:
| Q |
1 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
100 |
Q |
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|||||||||||| ||| | ||| || |||||||| ||| |||||||| |||||| ||||||||||| | ||||| ||||||||||||||||||| || |
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| T |
30088261 |
gcttctgaactttatgaggaacaagctatctggtcctgtaccttctggccttggagatttgcctcaactagaggtgcttgagctatggaacaattctttg |
30088360 |
T |
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| Q |
101 |
tcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
200 |
Q |
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| T |
30088361 |
tcagggccattgcctagagacctcggcaagaattcgccgctgcagtggttggatgtatcgtccaattcactctccggcgagattcctgaaactctttgca |
30088460 |
T |
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| Q |
201 |
gcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatc |
270 |
Q |
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||||| ||||| |||||||| ||||||||||||||||| ||| ||||| |||||| |||||||||| |
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| T |
30088461 |
ctaagggaaatctcaccaagcttatacttttcaacaatgccttcaagggtccgattccaacaagcctatc |
30088530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 44262096 - 44261990
Alignment:
| Q |
172 |
ctctggagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatca |
271 |
Q |
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||||||||||||| |||||||||| ||||| | || ||||| || | | ||||||||||| | ||||||||||||||||||||||||||| ||| || |
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| T |
44262096 |
ctctggagagattaaagaaactcttggcagccaaggaaatctcacaacattgatacttttcaatattgctttctctggtccaattccatcaagactacca |
44261997 |
T |
|
| Q |
272 |
atgtgtt |
278 |
Q |
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||||||| |
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| T |
44261996 |
atgtgtt |
44261990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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