View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_high_1 (Length: 539)
Name: NF3419_high_1
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Original strand, 35439302 - 35439815
Alignment:
| Q |
15 |
aaaatcatctcataattttagctactagctggtttatatttgttgtttgaagtgtttcgttctgtgaaatatttcattcgcaattgggcatatctccttt |
114 |
Q |
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| T |
35439302 |
aaaatcatctcataattttagctactagctggtttatatttgttgtttgaagtgtttcgttctgtgaaatatttcattcgcaattgggcatatctccttt |
35439401 |
T |
|
| Q |
115 |
ggcactttggagtccttgattgattcctattatcctggcgggcaaatcttctttggcatcagatctctggtttcagtagttgagataatcttgcggagat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35439402 |
ggcactttggagtccttgattgattcctattatcctggcgggcaaatcttctttggcatcagatctctggtttcagtagttgagataatcttccggagat |
35439501 |
T |
|
| Q |
215 |
actgaatatctgtgacnnnnnnntttaatcaatcataaatatatatttgtattatacacatctatccattgaagccatcatcagcatacttgttgcgatc |
314 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35439502 |
actgaatatctgtgacaaaaaaatttaatcaatcataaatatatatttgtattatacacatctatccattgaagctatcatcagcatacttgttgcgatc |
35439601 |
T |
|
| Q |
315 |
acagtacagacactgcagtttgatacttcaatttgcttgagaaggtaagcatgttcttgaatccttatttacttctaatattcatctatatgtatgttaa |
414 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35439602 |
actgtacagacactgcagtttgatacttcaatttgcttgagaaggtaagcatgttcttgaatccttatttacttctaatattcatctatatgtatgttaa |
35439701 |
T |
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| Q |
415 |
aattttgtcagccattctaaactatgcatatcatcaattttaaataaggaaaatagatcactaattgtttcacgcgtagctctcattcactgtacatgga |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35439702 |
aattttgtcagccattctaaactatgcatatcatcaattttaaataaggaaaatagattactaattgtttcacgcgtagctctcgttcactgtacatgga |
35439801 |
T |
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| Q |
515 |
ctagtttcttctct |
528 |
Q |
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|||||||||||||| |
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| T |
35439802 |
ctagtttcttctct |
35439815 |
T |
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