View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_high_10 (Length: 248)
Name: NF3419_high_10
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10820456 - 10820223
Alignment:
| Q |
1 |
atgaaaacttacaccattgcttgagatattttctgtttacactttatgaagagtaatgatgtcaggtctcatgattaaaagctgatctcatgacagcact |
100 |
Q |
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| T |
10820456 |
atgaaaacttacaccattgcttgagatattttctgtttacactttatgaagagtaatgatgtcaggtctcatgattaaaagctgatctcatgacagcact |
10820357 |
T |
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| Q |
101 |
cttttgttcgaaagctggtgcttatttccactaattcacttccaaagattcgaatcaaaacatacaagaaaactaaatctttggtcaagtttggtaggca |
200 |
Q |
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| T |
10820356 |
cttttgttcgaaagctggtgcttatttccactaattcacttccaaagattcgaatcataacatacaagaaaactaaatctttggtcaagtttggtaggca |
10820257 |
T |
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| Q |
201 |
aaggaattttggaatccaaataatcaatgttatg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10820256 |
aaggaattttggaatccaaataatcaatgttatg |
10820223 |
T |
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