View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_high_2 (Length: 494)
Name: NF3419_high_2
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 23 - 478
Target Start/End: Complemental strand, 53039653 - 53039198
Alignment:
| Q |
23 |
agcttcatttcctgctaatgcgaaaactggttgcaaggatgggtggcagtggcttgactcatccgatccgaatcccaacgtagctactggagcacttgtt |
122 |
Q |
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| T |
53039653 |
agcttcaattcctgctaatgcgaaaactggttgcaaggacgggtggcagtggcttgactcatccgatccgaatcccaatgtagctactggagcacttgtt |
53039554 |
T |
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| Q |
123 |
ggtggacctttcttaaatgagacttacattgattctaggaacaattctatgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttat |
222 |
Q |
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| T |
53039553 |
ggtggacctttcttaaatgagacttacattgattctaggaacaattctatgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttat |
53039454 |
T |
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| Q |
223 |
caagtttagtcaccacatcttcagcccttcaatccttctcctaaactatagtatgtagcttctccatattcaattccactcaaaagaagttgcgatgcgg |
322 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53039453 |
caagtttagtcaccacatcttcggcccttcaatccttctcctaaactatagtatgtagcttctccatattcaattccactcaaaagaagttgcgacgcgg |
53039354 |
T |
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| Q |
323 |
atttaagttttatggctttattcatttccttatcatcacgtattattagtgtatggatcgtgatactgtaactatacaatatattttgagtgtgaaccgt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53039353 |
atttaagttttatggctttattcatttccttatcatcacgtattattagtgtatggatcgtgatactgtaactatacaatatattttgagtgtgagccgt |
53039254 |
T |
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| Q |
423 |
ggtgtctggataggttagtcattaattaatgtatacaggtgaagtttgattctctg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039253 |
ggtgtctggataggttagtcattaattaatgtatacaggtgaagtttgattctctg |
53039198 |
T |
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