View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3419_high_9 (Length: 248)

Name: NF3419_high_9
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3419_high_9
NF3419_high_9
[»] chr4 (9 HSPs)
chr4 (63-232)||(8036372-8036541)
chr4 (63-232)||(8416287-8416456)
chr4 (82-232)||(8041789-8041939)
chr4 (106-232)||(9138976-9139102)
chr4 (82-232)||(8410653-8410803)
chr4 (106-223)||(8356499-8356616)
chr4 (106-232)||(8403626-8403752)
chr4 (106-232)||(43144849-43144975)
chr4 (106-222)||(8359546-8359662)
[»] chr7 (1 HSPs)
chr7 (106-232)||(5476165-5476291)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 8036541 - 8036372
Alignment:
Q  63 caagttgtttatcaaaccaggaactgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttga 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036541 caagttgtttatccaaccaggaactgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttga 8036442  T
Q  163 agcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036441 agcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 8036372  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 8416287 - 8416456
Alignment:
Q  63 caagttgtttatcaaaccaggaactgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttga 162  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  8416287 caagttgtttatccaaccaggaactgaagcgacagcggcgggaaaataggattagtgagttgcctgactgcttattgctccatatattgagttttcttga 8416386  T
Q  163 agcacaagatgctgttcagacttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 232  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8416387 agcacgagatgctgttcggacttgtatcttgtctaaacggtggaaggatctttgcaaacgcctcactact 8416456  T

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Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 8041939 - 8041789
Alignment:
Q  82 ggaactgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcag 181  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||| |    
T  8041939 ggaactgaagcgacagcggcaggaagataggattagtgatttgcctgactgcatattgctccacacattgggttttcttgaagcacgagatgctgttcgg 8041840  T
Q  182 acttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041839 acttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 8041789  T

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Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 9139102 - 9138976
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  9139102 aaataggatttgtgagttgcctgactgcatattgctccacatattgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtgg 9139003  T
Q  206 aaggatctttgcaaacgcgtcactact 232  Q
    ||||||||||||||| || ||||||||    
T  9139002 aaggatctttgcaaatgcctcactact 9138976  T

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Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 232
Target Start/End: Original strand, 8410653 - 8410803
Alignment:
Q  82 ggaactgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcag 181  Q
    ||||||||||  ||||  || ||||||||||||||||||||||||||||||| |||||||| | ||| |||| ||||||||||||| ||||||||||| |    
T  8410653 ggaactgaagacacagatgcgggaaaataggattagtgagttgcctgactgcttattgctctagatattgagttttcttgaagcacgagatgctgttcgg 8410752  T
Q  182 acttgtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactact 232  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  8410753 acttgcatcttgtctaaacggtggaaggatctttgcaaacgcctcactact 8410803  T

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Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 8356616 - 8356499
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    ||||||||||||||||||||| |||||| ||||| |||||||| |||| |||||||||||| |||||| ||||| |||||| |||||||||||||| |||    
T  8356616 aaataggattagtgagttgccagactgcttattggtccacatattgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatgg 8356517  T
Q  206 aaggatctttgcaaacgc 223  Q
    ||||||||||||||||||    
T  8356516 aaggatctttgcaaacgc 8356499  T

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Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 8403626 - 8403752
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    |||||||||| ||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||| ||||||| |||||| |||||||||||||| |||    
T  8403626 aaataggattggtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatgg 8403725  T
Q  206 aaggatctttgcaaacgcgtcactact 232  Q
    |||||||||||||||||  ||||||||    
T  8403726 aaggatctttgcaaacgtctcactact 8403752  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 43144975 - 43144849
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    |||| |||||||||||||||| ||||||||| ||||||| ||| |||| ||||||||||||| ||| | |||||  ||||| ||||||||||| || |||    
T  43144975 aaattggattagtgagttgcccgactgcatactgctccatataatgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatgg 43144876  T
Q  206 aaggatctttgcaaacgcgtcactact 232  Q
    ||||||||||||||||| |||||||||    
T  43144875 aaggatctttgcaaacgtgtcactact 43144849  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 8359662 - 8359546
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    ||||| ||| ||| |||| |||||||||||| ||||||||||| |||| ||| |  |||| | ||| |||||||  ||||| |||||||||||||| |||    
T  8359662 aaatatgatcagtaagttacctgactgcatactgctccacataatgagttttttgaaagctcgagacgctgttcgaacttgcatcttgtctaaacgatgg 8359563  T
Q  206 aaggatctttgcaaacg 222  Q
    |||||||||||||||||    
T  8359562 aaggatctttgcaaacg 8359546  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 5476165 - 5476291
Alignment:
Q  106 aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg 205  Q
    |||||||||||||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||| |||||| |||||||||||||| |||    
T  5476165 aaataggattagtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatgg 5476264  T
Q  206 aaggatctttgcaaacgcgtcactact 232  Q
    |||||||||||||||||  ||||||||    
T  5476265 aaggatctttgcaaacgtctcactact 5476291  T

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