View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_low_11 (Length: 231)
Name: NF3419_low_11
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6860971 - 6860741
Alignment:
| Q |
1 |
tatgaaaatcgtaaagaatccattgttcataaccaacataaaggaaccaatatctatctaaatataacatatatgacattcctaatttcaaaactaaaat |
100 |
Q |
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| T |
6860971 |
tatgaaaatcgtaaagaatccattgttcataaccaacataaaggaaccaatatctatctaaatataacatatatgacattcctaatttcaaaactaaaat |
6860872 |
T |
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| Q |
101 |
tcctatataattccttaccagaaatccattcccttaaggtgccgttgggcatgaattcataaaccagcatctggaccaagtaaaataatattagtatatg |
200 |
Q |
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| T |
6860871 |
tcctatatgattccttaccagaaatccattcccttaaggtgccattgggcatgaattcataaaccagcatctggaccaagtaaaataatattagtatatg |
6860772 |
T |
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| Q |
201 |
agatgatattatggtctggtatggaattgtt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6860771 |
agatgatattatggtctggtatggaattgtt |
6860741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 27631339 - 27631238
Alignment:
| Q |
110 |
attccttaccagaaatccattcccttaaggtgccgttgggcatgaattcataaaccagcatctggaccaagtaaaataatattagtatatgagatgatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||||| || |||||||||| |||| |
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| T |
27631339 |
attccttaccagaaatccattcccttaaggtgccattaggcatgaattcataaaccagcatctgaaccaagaaaaatagta----tatatgagataatat |
27631244 |
T |
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| Q |
210 |
tatggt |
215 |
Q |
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|||||| |
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| T |
27631243 |
tatggt |
27631238 |
T |
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