View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_low_3 (Length: 347)
Name: NF3419_low_3
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 44040830 - 44041144
Alignment:
| Q |
18 |
ttatttatgttacgtactatatatgacagactgaggagaagtctctcaaagatagcgaatctccaggtaaatgtcacaactcacaatgtatcaattttgt |
117 |
Q |
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| T |
44040830 |
ttattgatgttatgtactatatatgacagactgaggagaagtctctcaaagttagcgaatctccaggtaaatgtcacaactcacaatgtatcaattttgt |
44040929 |
T |
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| Q |
118 |
tctgaattcaagttatttttgttgtgtttctcannnnnnnctgtatggccttgcagtgagagcagcaaagttcattgttcgggaaaattggattatcgcg |
217 |
Q |
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| T |
44040930 |
tccgaattcaagttatttttgttgtgtttctcatttttttctgtttggccttgcagtgagagcagcaaagttcattgttcgggaaaattggattatcgcg |
44041029 |
T |
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| Q |
218 |
gcaactgatgacaaatatattcgcgtctacaattatgtgaaaatggaaaagataatagaatttgaggcacataaagattatattaggagtttggctgttc |
317 |
Q |
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| T |
44041030 |
gcaactgatgacaaatatattcgcgtctacaattatgagaaaatggaaaagataatagaatttgaggcacataaagattatattaggagtttggctgttc |
44041129 |
T |
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| Q |
318 |
atccatttctaccat |
332 |
Q |
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| T |
44041130 |
atccatttctaccat |
44041144 |
T |
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