View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3419_low_6 (Length: 250)
Name: NF3419_low_6
Description: NF3419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3419_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 44041385 - 44041149
Alignment:
| Q |
14 |
atatcgaggattatgacgctagccttgagcccttgaccataagaattacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcac |
113 |
Q |
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| T |
44041385 |
atatcgaggatcatcacgctagccttgagcccttgaccatacgaattacagttgaggattttcggttaagatacctttaaagttccatcgagggatgcac |
44041286 |
T |
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| Q |
114 |
tggcaaaggtagatggatccttgggattaaatgccacttgcatcacataatgtgagttcccttcaaaagtctcatcacaagaccaacctttcttccaatt |
213 |
Q |
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| T |
44041285 |
tggcaaaggtagatggatccttgggattaaatgccacttgcataacataatgtgagttcccttcaaaagtctcatcacaagaccaaccttttttccaatt |
44041186 |
T |
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| Q |
214 |
ccacaacttcaagacttgatcatcagaagccgatacc |
250 |
Q |
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| T |
44041185 |
ccacaacttcaagacttgatcatcagaagccgatacc |
44041149 |
T |
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