View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3420_high_1 (Length: 471)
Name: NF3420_high_1
Description: NF3420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3420_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 2 - 452
Target Start/End: Original strand, 10676250 - 10676696
Alignment:
| Q |
2 |
aaaacttacgcaaatttatggcaatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaaga |
101 |
Q |
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| T |
10676250 |
aaaacttacgcaaatttatggcaatccgaaccaagtaaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaaga |
10676349 |
T |
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| Q |
102 |
gctatgggaatggaacttatttgcggagaagctaatggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaacnnnn |
201 |
Q |
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| T |
10676350 |
gctatgggaatggaacttatttgtggagaagctaatggagcaaagcaatggaagatgctttgcttatgtagaactcttaaatctcaatggattaactata |
10676449 |
T |
|
| Q |
202 |
nnnnnnnncaaagggtcgcttagatatagtggcagttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagctagacttttat |
301 |
Q |
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| T |
10676450 |
tata----caaagggtcgcttagatatagtggcagttttgacgtgttataggttttttgttgacataaaaaatgacttacaaactgagcaagacttttat |
10676545 |
T |
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| Q |
302 |
ggtcacaaacacaaatgttttggatttagaagtgttgctaaatcgaaaaaatttgtgcttgtgaccatagaagtgttgctcgttacaaactaatgtcttc |
401 |
Q |
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| T |
10676546 |
ggtcacaaacacaaatgttttggatttagaagtgttggtaaatcgaaaatttttgtgcttgtgaccatagaagtgttgctcgttacaaactaatgtcttc |
10676645 |
T |
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| Q |
402 |
atatatagttcagtacggtagaagtgggggtgccacctttctcgttcgtac |
452 |
Q |
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| T |
10676646 |
atatatagttcagtacggtagaagtgggggtgccacctttctcgttcgtac |
10676696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 10672673 - 10672793
Alignment:
| Q |
37 |
taaatttggggaagttatcatgtccaaccaaaaacaatcactatggtttgttgttgtattcaagagctatgggaatggaac---ttatttgcggagaagc |
133 |
Q |
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| T |
10672673 |
taaatttggggtagatatcatgtccaacaaaaaa-aatcactgt--tttgttgttatattcaagagctatgggaatggagcctattatttgtgaacaagc |
10672769 |
T |
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| Q |
134 |
taatggagcaaagcaatggaagat |
157 |
Q |
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| T |
10672770 |
taatggagcaaagcaatggaagat |
10672793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 10672815 - 10672902
Alignment:
| Q |
237 |
ttttgacgtgttataggttttttgtt---gacataaaaaatgacttacaaactgagctagacttttatggtcacaaacacaaatgtttt |
322 |
Q |
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| T |
10672815 |
tttttacgtgttataggttttttttttttgacataaaaaatgacttacaaacatagctagacttatat-gtcacaaacataaatgtttt |
10672902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 10673524 - 10673560
Alignment:
| Q |
360 |
ttgtgaccatagaagtgttgctcgttacaaactaatg |
396 |
Q |
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| T |
10673524 |
ttgtgaccatagaagtgttgcaccttacaaactaatg |
10673560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 28506375 - 28506313
Alignment:
| Q |
105 |
atgggaatggaacttatttgcggagaagctaatggagcaaagcaatggaagatgctttgctta |
167 |
Q |
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| T |
28506375 |
atgggaatggaaccaatttgtggacaagcttatggagcaaaacaatggaagatacttggctta |
28506313 |
T |
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