View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3420_high_7 (Length: 230)
Name: NF3420_high_7
Description: NF3420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3420_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 29786539 - 29786754
Alignment:
| Q |
1 |
aaatgacataattcaatgtaatcaattcattatagagttgaaaaacctattctacgagcattattaaataattaaattaattaaaacattgnnnnnnn-a |
99 |
Q |
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| T |
29786539 |
aaatgacacaattcaatgtattcaattcattatagagttgaaaaacctattctacgagcattattaaataattaaattagttaaaacattgtttttttta |
29786638 |
T |
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| Q |
100 |
cagcaaattagctaaaacatggaaacaaaacaaattgatgaaacaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgccttcggcaa |
199 |
Q |
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| T |
29786639 |
cagaaaattagctaaaacatggaaacaaaactaattgatgaaacaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgccttcggcaa |
29786738 |
T |
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| Q |
200 |
acaatttcttcaaaat |
215 |
Q |
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| T |
29786739 |
acaatttcttcaaaat |
29786754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 29776333 - 29776403
Alignment:
| Q |
142 |
acaaaccagagtttagaggtaatccacaaatcttcacgtttcactacgccttcggcaaacaatttcttcaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||| || | ||||| |||||||| |
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| T |
29776333 |
acaaaccagagtttagaggtaatccacaaatcttcgcgcttcactacgccctcatcgaacaacttcttcaa |
29776403 |
T |
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