View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3420_low_4 (Length: 262)
Name: NF3420_low_4
Description: NF3420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3420_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 32633931 - 32634178
Alignment:
| Q |
1 |
gatgaacaaataacagacatgttaaaagtttttgacaaagatggtgaccaaattataaccaaggaagaatttgttaatggcgtaacagaatactttaatc |
100 |
Q |
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| T |
32633931 |
gatgaacaaataacagacatgttaaaagtttttgacaaagatggtgaccaaattataaccaaggaagaatttgttaatggcgtaacagaatactttaacc |
32634030 |
T |
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| Q |
101 |
aaacaaagcatgctttgcataaacagtaccttcccaaagaaaatatgagcagaatgtatcaggtatttattgtaactcacaatgtggcatgattgttata |
200 |
Q |
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| T |
32634031 |
aaacaaagcatgctttgcataaacagtacattcccaaagaaaatatgagcagaatgtatcaggtatttattgtaactcacaatgtgacatgattgttata |
32634130 |
T |
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| Q |
201 |
catta--tgaatcatattttccttgaacaatctgctactatttgaaat |
246 |
Q |
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| T |
32634131 |
cattatgtgaattatattttccttgaacaatctactactatttgaaat |
32634178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 32615610 - 32615768
Alignment:
| Q |
7 |
caaataacagacatgttaaaagtttttgacaaagatggtgaccaaattataaccaaggaagaatttgttaatggcgtaacagaatactttaatcaaacaa |
106 |
Q |
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|||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| |||| |||||||||| |||| ||||||| |
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| T |
32615610 |
caaatagcagacatgttaaaagcttttgacaaaaatggcgaccaaattataaccaaagaagaatttgttagtggcttaacagaatatattaaccaaacaa |
32615709 |
T |
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| Q |
107 |
agcatgctttgcataaacagtaccttcccaaagaaaatatgagcagaatgtatcaggta |
165 |
Q |
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| T |
32615710 |
agcatgctttggatagaaagtacctccctaaggaatctatgaacaaaatgtatcaggta |
32615768 |
T |
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