View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3420_low_5 (Length: 259)
Name: NF3420_low_5
Description: NF3420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3420_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 10676001 - 10676248
Alignment:
| Q |
9 |
gagatgaacttgaacttgaaattaacttttatctattgtagtagctaaacacagattttcttgaagtacatcttagagaattacttatcaacatacataa |
108 |
Q |
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| T |
10676001 |
gagatgaacttgaacttgaaattaacttttatttattgtagtagctaaacacagattttcttgaagtacatcttagagaattacttatcaacatacataa |
10676100 |
T |
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| Q |
109 |
aaaatactaataaaaaagacaacccgtaaaatcataacaccattccttcctttactattgcacaatgcacatgcatgtttccacaagccaacttcttgag |
208 |
Q |
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| T |
10676101 |
aa-atactaataaaaaagacaacccgtaaaatcataacaccattacttcctttactattgcacaatgcacatgcatgtttccacaagccaacttcttgag |
10676199 |
T |
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| Q |
209 |
acttaatttcatatatatagcgaacccatatatataggtcttgtgttaaca |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10676200 |
acttaatttcatatatatagcgaaccc--atatataggtcttgtgttaaca |
10676248 |
T |
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