View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3421_high_1 (Length: 423)
Name: NF3421_high_1
Description: NF3421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3421_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 32588464 - 32588701
Alignment:
| Q |
17 |
caaggaccaccttaaaacctttaactctagtggaacctacattatcatattctgcaaacagaaaaattgatttcctttggatgatatcgcagaaaataat |
116 |
Q |
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| T |
32588464 |
caaggaccaccttaaaacctttaactctagtggaacctacattatcatattctgcaaacagaaaaattgatttcctttgtatgatatcgcagaaaataat |
32588563 |
T |
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| Q |
117 |
aaaagtgtcaatacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactat |
216 |
Q |
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| T |
32588564 |
aaaagtgtcaatacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactat |
32588663 |
T |
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| Q |
217 |
atccgttttaaaattccctcacaaacacgcataaacat |
254 |
Q |
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| T |
32588664 |
atccgttttaaaattccctcacaaacacgcataaacat |
32588701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 32588796 - 32588860
Alignment:
| Q |
349 |
cattaatgtgatagtttgattcctgaagtataatttatccacctctcccttccactgtgcctttg |
413 |
Q |
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| T |
32588796 |
cattaatgtgatagtttgattcctgaagtataatttatccacctctcccttccactgcgcctttg |
32588860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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