View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3421_high_2 (Length: 339)
Name: NF3421_high_2
Description: NF3421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3421_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 26722632 - 26722940
Alignment:
| Q |
16 |
acgcatgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtccnnnnnnnnnn---ccttcctgcaattggtatagttttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26722632 |
acgcatgatgttgcatgttaagaaaataaagtcaagtgcttaaattggtatagtttctgtcctttttttttttttccttcctgcaattggtatagttttt |
26722731 |
T |
|
| Q |
113 |
gttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaagttaatttat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26722732 |
gttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggtaagttaatttat |
26722831 |
T |
|
| Q |
213 |
gaacaaatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26722832 |
gaacaaatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatat----gattttgtcaatcaatctt |
26722927 |
T |
|
| Q |
313 |
ggacaagaaagct |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26722928 |
ggacaagaaagct |
26722940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 114 - 314
Target Start/End: Complemental strand, 26837902 - 26837708
Alignment:
| Q |
114 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaagttaatttatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || |
|
|
| T |
26837902 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcata |
26837809 |
T |
|
| Q |
214 |
aacaaatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaagatgttggcatatgagggattttgtcaatcaatcttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
26837808 |
aacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatgagggattttgtccatcaaacttg |
26837709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 7850924 - 7850981
Alignment:
| Q |
20 |
atgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgtcc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7850924 |
atgatgttgcatgttaagaaaataaagttaagaacttaaaatggtatagtttctgtcc |
7850981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University