View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3421_high_5 (Length: 258)

Name: NF3421_high_5
Description: NF3421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3421_high_5
NF3421_high_5
[»] chr3 (12 HSPs)
chr3 (19-245)||(10364611-10364837)
chr3 (19-248)||(10376656-10376897)
chr3 (165-240)||(10076431-10076506)
chr3 (22-88)||(10218493-10218558)
chr3 (54-88)||(10108543-10108577)
chr3 (27-57)||(10439255-10439285)
chr3 (24-65)||(9998188-9998229)
chr3 (55-88)||(9998778-9998811)
chr3 (24-65)||(10107960-10108001)
chr3 (24-65)||(10229196-10229237)
chr3 (55-88)||(10229783-10229816)
chr3 (24-65)||(10232792-10232833)
[»] scaffold0083 (1 HSPs)
scaffold0083 (163-239)||(50568-50644)
[»] chr5 (5 HSPs)
chr5 (22-88)||(26797964-26798029)
chr5 (24-65)||(26802573-26802614)
chr5 (24-65)||(26810123-26810164)
chr5 (24-65)||(26825150-26825191)
chr5 (55-88)||(26825737-26825770)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 10364837 - 10364611
Alignment:
Q  19 caatcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcattt 118  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10364837 caatcgagtatatattgaaatggtctacagtagaatttatcattcaaacttcaaagatgccaattgctttagtctaatgtgggtccacaaacaagcattt 10364738  T
Q  119 attttttctgttggatgatacatattatagataagaaaagttatctatatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  10364737 attttttctgttggatgatacatattatagataagaaaagttatctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattca 10364638  T
Q  219 caagcgagtcttctttgagtctctgct 245  Q
    ||||| |||||||||||||||| ||||    
T  10364637 caagcaagtcttctttgagtctttgct 10364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 10376897 - 10376656
Alignment:
Q  19 caatcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376897 caatcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcattt 10376798  T
Q  119 attttttctgttggatgatacatattatagataagaaaagttatctatatgca------------cttccaaccattcaaaaacagcactgttaatgtta 206  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||||||| |||||    
T  10376797 attttttctgttggatgatacatattatagataagaaaagatatctatatgcacttctatatgcacttccaaccattcaaaaacagcactgttagtgtta 10376698  T
Q  207 tccattcactcacaagcgagtcttctttgagtctctgctcct 248  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  10376697 tccattcactcacaagcgagtcttctttgagtctttgctcct 10376656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 10076431 - 10076506
Alignment:
Q  165 atatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactcacaagcgagtcttctttgagtct 240  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  10076431 atatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtcttctttgagtct 10076506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 10218493 - 10218558
Alignment:
Q  22 tcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattccttt 88  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||| ||||||||||||||| ||||    
T  10218493 tcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgcttt 10218558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 10108543 - 10108577
Alignment:
Q  54 tttatcattcaaacttcaaagatgccaattccttt 88  Q
    |||||||||||||||||||||||||||||| ||||    
T  10108543 tttatcattcaaacttcaaagatgccaattgcttt 10108577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 10439255 - 10439285
Alignment:
Q  27 tatatattgaaatggtccacagtagaattta 57  Q
    |||||||||||||||||||||||||||||||    
T  10439255 tatatattgaaatggtccacagtagaattta 10439285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9998188 - 9998229
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  9998188 gactatatattgaaatgttccacaataaaatttatcattcaa 9998229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 9998778 - 9998811
Alignment:
Q  55 ttatcattcaaacttcaaagatgccaattccttt 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  9998778 ttatcattcaaacttcaaagatgccaattgcttt 9998811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 10107960 - 10108001
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  10107960 gactatatattgaaatgttccacaataaaatttatcattcaa 10108001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 10229196 - 10229237
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  10229196 gactatatattgaaatgttccacaataaaatttatcattcaa 10229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 10229783 - 10229816
Alignment:
Q  55 ttatcattcaaacttcaaagatgccaattccttt 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  10229783 ttatcattcaaacttcaaagatgccaattgcttt 10229816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 10232792 - 10232833
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  10232792 gactatatattgaaatgttccacaataaaatttatcattcaa 10232833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 50644 - 50568
Alignment:
Q  163 ctatatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactcacaagcgagtcttctttgagtc 239  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||    
T  50644 ctatatgcacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtcttctttgagtc 50568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 26797964 - 26798029
Alignment:
Q  22 tcgactatatattgaaatggtccacagtagaatttatcattcaaacttcaaagatgccaattccttt 88  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||| ||||||||||||||| ||||    
T  26797964 tcgactatatattgaaatgttccacaaaaaaatttatcattcaaac-tcaaagatgccaattgcttt 26798029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26802573 - 26802614
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  26802573 gactatatattgaaatgttccacaataaaatttatcattcaa 26802614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26810123 - 26810164
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  26810123 gactatatattgaaatgttccacaataaaatttatcattcaa 26810164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26825150 - 26825191
Alignment:
Q  24 gactatatattgaaatggtccacagtagaatttatcattcaa 65  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  26825150 gactatatattgaaatgttccacaataaaatttatcattcaa 26825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 26825737 - 26825770
Alignment:
Q  55 ttatcattcaaacttcaaagatgccaattccttt 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  26825737 ttatcattcaaacttcaaagatgccaattgcttt 26825770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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