View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3421_high_6 (Length: 243)
Name: NF3421_high_6
Description: NF3421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3421_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 26723401 - 26723192
Alignment:
| Q |
32 |
aagacacttgaataatgaataaaataaaaagaaatcaaaattcttcattgagttcaaacatattgatcacgataaaaattggcagaatgctttagtaaaa |
131 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
26723401 |
aagacacttgaataatgaataaaataaaaagaaattaaaattcttcattgagttcaaacatattgatcacgacaaaaattggcagaatgctttaataaaa |
26723302 |
T |
|
| Q |
132 |
tagatagtctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaaatagata |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
26723301 |
tagatagtctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctaaagtctagtaacaaaa-agata |
26723203 |
T |
|
| Q |
232 |
gtcccaatact |
242 |
Q |
| |
|
||||||||||| |
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|
| T |
26723202 |
gtcccaatact |
26723192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 26723192 - 26723136
Alignment:
| Q |
147 |
tcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatactt |
203 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
26723192 |
tcgaaatagaaatagctaaaccaaaattcacaacatagtcgactcaaaaatatactt |
26723136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 2988145 - 2987941
Alignment:
| Q |
32 |
aagacacttgaataatgaataaaataaaaagaaatcaaaattcttcattgagttcaaacatattgatcacgataaaaattggcagaatgctttagtaaaa |
131 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
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|
| T |
2988145 |
aagacacttgaataatgaataaaataaaaagaaatcaaaattcttcattgagttcaaacatattgatcacgacaaacattggcagaatgctttaataaaa |
2988046 |
T |
|
| Q |
132 |
tagatag--tctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaaataga |
229 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2988045 |
tagatagtttctgatactcgaaatagaaacttctaaaccaaaattgacaacataatcgactcaaaactatacttttcctgaagtctagtaacaaaataga |
2987946 |
T |
|
| Q |
230 |
tagtc |
234 |
Q |
| |
|
||||| |
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|
| T |
2987945 |
tagtc |
2987941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 2987953 - 2987880
Alignment:
| Q |
128 |
aaaatagatagtct-gatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactata |
200 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
2987953 |
aaaatagatagtctcgatactctaaatagaaataactaaaccaaaattcacaacatagtcgactcaaaaatata |
2987880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 45116233 - 45116437
Alignment:
| Q |
32 |
aagacacttgaataatgaataaaataaaaagaaatcaaaattcttcattgagttcaaacatattgatcacgataaaaattggcagaatgctttagtaaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
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|
| T |
45116233 |
aagacacttgaataatgaataaaataaaaagaaatcaaaattcttcattgagttcaaacatattgatcacgacaaacattggcagaatgctttaataaaa |
45116332 |
T |
|
| Q |
132 |
tagatag--tctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaaataga |
229 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45116333 |
tagatagtttctgatactcgaaatagaaacttctaaaccaaaattgacaacataatcgactcaaaactatacttttcctgaagtctagtaacaaaataga |
45116432 |
T |
|
| Q |
230 |
tagtc |
234 |
Q |
| |
|
||||| |
|
|
| T |
45116433 |
tagtc |
45116437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 45116425 - 45116498
Alignment:
| Q |
128 |
aaaatagatagtct-gatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactata |
200 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
45116425 |
aaaatagatagtctcgatactctaaatagaaatacctaaaccaaaattcacaacatagtcgactcaaaaatata |
45116498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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