View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3422_high_1 (Length: 546)
Name: NF3422_high_1
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3422_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 40481609 - 40481100
Alignment:
| Q |
1 |
tacctgaatgtatatatatttcattctggaaatgaaatagcatagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaacc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40481609 |
tacctgaatgtatatat--ttcattctggaaatgaaatagcatagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaaac |
40481512 |
T |
|
| Q |
101 |
ttgtgaaaaattaagatgaaacatttattcattaggttagctggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgggaattttttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40481511 |
ttgtgaaaaattaagatgaaacatttattcattaggttagctggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgggaaatttttc |
40481412 |
T |
|
| Q |
201 |
actcaagtaaaacatcactgcaaaagtaacctcgactacataatgaacaacaattaaagaaaaaagaaaactataagaaaatagtacacaacacaatcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40481411 |
actcaagtaaaacatcactgcaaaagtaagctcgactacataatgaacaacaattaaagaaaaaagaaaactataagaaaatagtacacaacacaatcat |
40481312 |
T |
|
| Q |
301 |
ggatagcatgcatgcatctccatgaatattcagcatgtagagctagttggggcatgttttggactttgaggatggaggaggtggtggtgaaaccgtgttt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40481311 |
gcatagcatgcatgcatctccatgaatattcagcatgtagagttagttggg----------------gaggatggaggaggtggtggtgaaaccgtgttt |
40481228 |
T |
|
| Q |
401 |
gaactggaacccttaggatcaacaatcttatcccacatcatcttcttcacagaacgtttatttgcagggacgacactcccattttttggtttgtgccatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40481227 |
gaactggaacccttaggatcaacaatcttatcccacatcatcttcttcaccgaacgtttatttgcagggaagacactcccattttttggtttgtgccatg |
40481128 |
T |
|
| Q |
501 |
gctctgtttcctctgttttcaccatact |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40481127 |
gctctgtttcctctgttttcaccatact |
40481100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 306 - 526
Target Start/End: Complemental strand, 40491835 - 40491612
Alignment:
| Q |
306 |
gcatgcatgcatctccatgaatattcagcatgtagagctagttggggcatgttttggactttgaggatggaggaggtggtggtgaaaccgtgtttgaact |
405 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40491835 |
gcatgcatgcatttccatgaatattcagcatgtagagctagttggggcatgttttggactttgaggatggaggaggtggcggtgaaaccgtgtttgaact |
40491736 |
T |
|
| Q |
406 |
ggaa---cccttaggatcaacaatcttatcccacatcatcttcttcacagaacgtttatttgcagggacgacactcccattttttggtttgtgccatggc |
502 |
Q |
| |
|
|||| ||||| || |||||||| |||||| ||||||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||| | |
|
|
| T |
40491735 |
ggaattacccttgtaattaacaatctgatcccatatcatcttcttcacagaacgtttctttggagggaatacacttccattctttggtttgtgccatgcc |
40491636 |
T |
|
| Q |
503 |
tctgtttcctctgttttcaccata |
526 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
40491635 |
tctgtttccactgttttctccata |
40491612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 375 - 524
Target Start/End: Complemental strand, 40471638 - 40471483
Alignment:
| Q |
375 |
gaggaggtggtggtgaaaccgtgtttgaactggaa------cccttaggatcaacaatcttatcccacatcatcttcttcacagaacgtttatttgcagg |
468 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40471638 |
gaggaggtggcggcgaaaccgtgttggaactggaattattgcccttaggatcaacaaactgatcccacatcatcttcttcacagaacgtttctttgcagg |
40471539 |
T |
|
| Q |
469 |
gacgacactcccattttttggtttgtgccatggctctgtttcctctgttttcacca |
524 |
Q |
| |
|
|| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40471538 |
gaagacactcccattctttggtttgtgccatgcctctgtttcctctgttttcacca |
40471483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 40492120 - 40491915
Alignment:
| Q |
42 |
atagatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaaccttgtgaaaaattaagatgaaacatttattcattaggttagc |
141 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||| ||||||||| | || |||||||||| || |
|
|
| T |
40492120 |
atagatattgattttgaataattaaataattttcatc---ccattgaaattcaaaaaccttgtgaaaaat-aagatgaaatagttcttcattaggtatgc |
40492025 |
T |
|
| Q |
142 |
tggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgg-gaattttttcactcaagtaaaacatcactgcaaaagtaacctcgactaca |
240 |
Q |
| |
|
||||| |||||| ||| |||||||| |||||||| |||| ||||||| || |||||| | || |||||| || |||||||| ||||||||||||| |
|
|
| T |
40492024 |
tggtagtataagcggacgatacaaacacaaaccc---catggaaaatggaaaaaaatttcacactagcaaaacaacattgcaaaagcaacctcgactaca |
40491928 |
T |
|
| Q |
241 |
taatgaacaacaa |
253 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
40491927 |
tgatgaacaacaa |
40491915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 522
Target Start/End: Complemental strand, 40501663 - 40501559
Alignment:
| Q |
418 |
atcaacaatcttatcccacatcatcttcttcacagaacgtttatttgcagggacgacactcccattttttggtttgtgccatggctctgtttcctctgtt |
517 |
Q |
| |
|
||||||||| | |||||| ||||| | ||||||||| ||||| |||||||||| ||||||| ||| || |||||| |||||| |||||||||||||||| |
|
|
| T |
40501663 |
atcaacaatttcatcccatatcatttgcttcacagagcgtttctttgcagggaagacactcttattcttcggtttgggccatgcctctgtttcctctgtt |
40501564 |
T |
|
| Q |
518 |
ttcac |
522 |
Q |
| |
|
||||| |
|
|
| T |
40501563 |
ttcac |
40501559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University