View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3422_high_10 (Length: 242)

Name: NF3422_high_10
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3422_high_10
NF3422_high_10
[»] chr8 (7 HSPs)
chr8 (1-226)||(1789007-1789232)
chr8 (1-156)||(21185436-21185594)
chr8 (150-226)||(38678622-38678696)
chr8 (118-223)||(21347016-21347118)
chr8 (150-226)||(38676243-38676317)
chr8 (120-201)||(17028259-17028340)
chr8 (120-201)||(17558695-17558776)
[»] chr7 (3 HSPs)
chr7 (1-226)||(11673788-11674011)
chr7 (150-226)||(5434970-5435045)
chr7 (175-224)||(3850650-3850699)
[»] chr2 (5 HSPs)
chr2 (1-226)||(18739219-18739439)
chr2 (1-226)||(2590285-2590510)
chr2 (143-227)||(35969380-35969463)
chr2 (174-226)||(14433708-14433760)
chr2 (143-226)||(21189329-21189411)
[»] chr6 (2 HSPs)
chr6 (1-226)||(19697953-19698173)
chr6 (152-226)||(15517977-15518050)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-226)||(82405-82631)
scaffold0014 (1-91)||(86809-86900)
[»] chr1 (6 HSPs)
chr1 (156-224)||(24981272-24981339)
chr1 (151-226)||(1953623-1953697)
chr1 (151-226)||(47580330-47580404)
chr1 (150-226)||(12141760-12141835)
chr1 (175-226)||(51465455-51465504)
chr1 (151-225)||(38825586-38825659)
[»] chr5 (4 HSPs)
chr5 (150-226)||(18594749-18594824)
chr5 (150-226)||(26703126-26703201)
chr5 (150-226)||(26972859-26972934)
chr5 (118-222)||(39292008-39292111)
[»] chr3 (4 HSPs)
chr3 (143-224)||(19930144-19930225)
chr3 (119-209)||(42256930-42257017)
chr3 (143-209)||(42253676-42253742)
chr3 (118-227)||(11634278-11634382)
[»] chr4 (4 HSPs)
chr4 (163-226)||(13010640-13010702)
chr4 (118-192)||(20058204-20058277)
chr4 (150-226)||(6667827-6667900)
chr4 (150-226)||(6671493-6671566)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1789232 - 1789007
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccagtacata--a 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||| |  |    
T  1789232 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagata-cacttaactacta-aatacatagcaattgccagtacagagaa 1789135  T
Q  99 aaataactacaaagacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgata 198  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1789134 aaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgata 1789035  T
Q  199 tctttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||||||    
T  1789034 tctttgagataaatttgagttgttctgt 1789007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21185594 - 21185436
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaact-actataatacatagcaattgccagtacataaa 99  Q
    ||||||||||||||| | | ||| |||||| |||||||||||||||||||        ||||||||| |||  ||||||||||||||||||||||| |||    
T  21185594 aacaactcaccacaactttaatgaatatatccttcttttatttctccaaa-gaagacacgcttaactcactgcaatacatagcaattgccagtacaaaaa 21185496  T
Q  100 aataactacaaagacatactc--tca-cttcatgtttttctgtacccacaatcattttct 156  Q
    |||||| | | | ||||||||  ||| |||||||||||||||||| | |||| |||||||    
T  21185495 aataacgatagatacatactctttcaccttcatgtttttctgtactctcaattattttct 21185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 38678622 - 38678696
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||  ||||||| || |||||| || ||||||| ||||||||||||||||||||||    
T  38678622 attttctctcatccaaaatattgaa-tttctgg-ttgcatctcttgttatctttaagataaatttgagttgttctgt 38678696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 21347016 - 21347118
Alignment:
Q  118 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 217  Q
    |||||||||||| ||||||||||   ||||| ||||||||||||||||| |||||| |||| |||||||||||||  | | |||||||||| | ||| ||    
T  21347016 ctctcacttcatatttttctgtat--acaattattttctctcatccaaagtattga-gtttgtgggttacatctccggttgtctttgagattattttcag 21347112  T
Q  218 ttgttc 223  Q
    ||||||    
T  21347113 ttgttc 21347118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 38676243 - 38676317
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||||||||||||||| |||||| ||||  ||||| || ||||||| | ||||||||||||||||||||    
T  38676243 attttctctcatccaaaatattga-gtttct-ggttgtatctcctgttatctttaaaataaatttgagttgttctgt 38676317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 17028259 - 17028340
Alignment:
Q  120 ctcacttcatgtttttctgtacccacaatcattttctctcatccaaaa-tattgaggtttctgggttacatctcatgatatct 201  Q
    |||||||||||||| | | ||| || ||| |||||||||||||||||| |||||| |||||| ||||||||||| ||||||||    
T  17028259 ctcacttcatgtttctttttacacataattattttctctcatccaaaattattga-gtttctaggttacatctcctgatatct 17028340  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 17558695 - 17558776
Alignment:
Q  120 ctcacttcatgtttttctgtacccacaatcattttctctcatccaaaa-tattgaggtttctgggttacatctcatgatatct 201  Q
    |||||||||||||| | | ||| || ||| |||||||||||||||||| |||||| |||||| ||||||||||| ||||||||    
T  17558695 ctcacttcatgtttctttttacacataattattttctctcatccaaaattattga-gtttctaggttacatctcctgatatct 17558776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11673788 - 11674011
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccagtacataaaa 100  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||| |||| || ||||    
T  11673788 aacaactcaccacaactctgatgtatatattcttcttttatttctccaaacaagata-cgcttaactactacaatacatagcaattgtcagtccaaaaaa 11673886  T
Q  101 ataactacaaagacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatc 200  Q
    ||||||||| | |||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11673887 ataactacagatacatactctcacttcatgtttt-ctgtacatacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatc 11673985  T
Q  201 tttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||||    
T  11673986 tttgagataaatttgagttgttctgt 11674011  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 5435045 - 5434970
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||  |||||| |||||||||||||| |||||||||||    
T  5435045 attttctatcatccaaaatattgag-tttatgggttacatcttctgatatttttgagataaattttagttgttctgt 5434970  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 3850699 - 3850650
Alignment:
Q  175 gtttctgggttacatctcatgatatctttgagataaatttgagttgttct 224  Q
    |||||||| ||| || ||||| ||||||||||||||||||||||||||||    
T  3850699 gtttctggattaaatatcatgttatctttgagataaatttgagttgttct 3850650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 18739439 - 18739219
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccagtacataaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||| ||||    
T  18739439 aacaactcaccacaactctcatgtatatattcttcttttatttctccaaacaagata-cgcttaactactacaatacatagcaattgccagtacacaaaa 18739341  T
Q  101 ataactacaaagacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatc 200  Q
    |||    || | |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18739340 ata----catatacatactctcacttcatgtttttctgtacgtacaattattttctctcatccaaaatattgaggtttctgggttacatctcatgatata 18739245  T
Q  201 tttgagataaatttgagttgttctgt 226  Q
    ||||||||||||| ||| ||||||||    
T  18739244 tttgagataaattcgagctgttctgt 18739219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2590285 - 2590510
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaact-actataatacatagcaattgccagtacataaa 99  Q
    ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||       | ||||||| |||| ||||||||||||||||| ||||| |||    
T  2590285 aacaactcaccgcaactctcatgaatatatccttcttttatttctccaaacaaaaaa-cacttaactcactacaatacatagcaattgccggtacagaaa 2590383  T
Q  100 aataactacaaagacatactct--cacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgat 197  Q
    |||||| ||||| ||||||| |  |||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  2590384 aataacgacaaatacatactttttcacttcatgttttt-tgtactcacaattattttctctcatctaaaatattgag-tttctgggttatatctcctgat 2590481  T
Q  198 atctttgagataaatttgagttgttctgt 226  Q
    |||| ||||||||||||||||||||||||    
T  2590482 atctatgagataaatttgagttgttctgt 2590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 35969463 - 35969380
Alignment:
Q  143 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtt 227  Q
    |||||| ||||||||||||| ||||||||||| ||||| ||||||||||   | |||||||||||||||||||||||||||||||    
T  35969463 cacaattattttctctcatctaaaatattgag-tttctaggttacatcttcggttatctttgagataaatttgagttgttctgtt 35969380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 14433760 - 14433708
Alignment:
Q  174 ggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  14433760 ggtttctaggttacatctcctgatatctttgagataaatttgagttattctgt 14433708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 21189329 - 21189411
Alignment:
Q  143 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||| ||||||||||||| ||| ||||||| || ||||||||||||||  | |||||||||||| | |||||||||||||||    
T  21189329 cacaattattttctctcatctaaagtattgagctt-ctgggttacatctccggttatctttgagattattttgagttgttctgt 21189411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 19698173 - 19697953
Alignment:
Q  1 aacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccagtacataaaa 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||       || |||||||||| ||||||||||||||||||||||| ||||    
T  19698173 aacaactcaccacaactttcatgtatatattcttcttttatttctccaaacaagata-cgattaactactacaatacatagcaattgccagtacagaaaa 19698075  T
Q  101 ataactacaaagacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatc 200  Q
    ||||||||| | |||||||||||||| |||||||    |||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19698074 ataactacagatacatactctcacttaatgtttt----tacgtacaattattttctctcttccaaaatattgaggtttctgggttacatctcatgatatc 19697979  T
Q  201 tttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||||    
T  19697978 tttgagataaatttgagttgttctgt 19697953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 15517977 - 15518050
Alignment:
Q  152 tttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||| ||||| |||||||||||| ||||||||||||||||| | |||||||| ||||||| ||||||||||||||    
T  15517977 tttccctcattcaaaatattgag-tttctgggttacatctcctcatatctttaagataaagttgagttgttctgt 15518050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 82405 - 82631
Alignment:
Q  1 aacaactcaccacaaatctc--atgtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccagtacataa 98  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||       || |||||||||| |||||| |||||||||||||||   |    
T  82405 aacaactcaccacaactctcgtatgtatatattcttcttttatttctccaaacaaaaat-cgtttaactactacaatacacagcaattgccagtacggca 82503  T
Q  99 aaataactacaaagacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgata 198  Q
    ||||||||||| |  |||||| | |||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  82504 aaataactacagattcatactttaacttcacgtttttctatacgtacaatcattttctctcatccaaaatattgaggtttctgggttgcatctcatgata 82603  T
Q  199 tctttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||| ||||||||    
T  82604 tctttgagataaatttgagatgttctgt 82631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 86809 - 86900
Alignment:
Q  1 aacaactcaccacaaatctcat--gtatatattcttcttttatttctccaaacnnnnnnncgcttaactactataatacatagcaattgccag 91  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||||||||       ||||||||||||| |||||| | ||||||||||    
T  86809 aacaactcaccacaactctcatatgtatatattcttcttttatttctccaaac-aaaaaacgcttaactactacaatacacaacaattgccag 86900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 24981339 - 24981272
Alignment:
Q  156 tctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttct 224  Q
    ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24981339 tctcatccaaaatattgag-tttctgtgttacatctcctgatatctttgagataaatttgagttgttct 24981272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 1953623 - 1953697
Alignment:
Q  151 ttttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||| ||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1953623 ttttctcttatccaaaatgttgag-tttctgggttacatctcctgacatctttgtgataaatttgagttgttctgt 1953697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 47580330 - 47580404
Alignment:
Q  151 ttttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||| ||||||    
T  47580330 ttttctctcatccaaaatgttgag-tttctgggttacatctcctgacatctttgtgataaatttgagttcttctgt 47580404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 12141835 - 12141760
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||| |||||||||||||||||| ||| ||||||| ||||  |||||||||||| ||||||||||||||||||||    
T  12141835 attttccctcatccaaaatattgagtttt-tgggttatatcttctgatatctttgatataaatttgagttgttctgt 12141760  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 51465455 - 51465504
Alignment:
Q  175 gtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  51465455 gtttctgggttacatctcctgatatct--gagataaatttgagttgttctgt 51465504  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 38825659 - 38825586
Alignment:
Q  151 ttttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctg 225  Q
    ||||||||| ||| |||||||||  |||| |||||||||||  || |||||||||||||||||  ||||||||||    
T  38825659 ttttctctcctcctaaatattgaattttc-gggttacatcttctgttatctttgagataaattcaagttgttctg 38825586  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 18594749 - 18594824
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  18594749 attttttctcatctaaaatattgagtttt-tgggttacatctcctgatatctttgacataaatttgagttgttctgt 18594824  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 26703201 - 26703126
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||| || | || ||||||||| |||||||| ||||||||||||||  ||||||||    
T  26703201 attttctctcatccaaaatattgagtttacagg-ttacatctcttgatatctgtgagataaatttgaactgttctgt 26703126  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 26972934 - 26972859
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    ||||||||||||||||||||||||| || | || ||||||||| |||||||| ||||||||||||||  ||||||||    
T  26972934 attttctctcatccaaaatattgagtttacagg-ttacatctcttgatatctgtgagataaatttgaactgttctgt 26972859  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 39292008 - 39292111
Alignment:
Q  118 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 217  Q
    |||||| || |||| ||||| ||  |||||| ||||||||||||| ||| ||||||| || ||||||||||||||  | |||||||||||| | ||||||    
T  39292008 ctctcattttatgtgtttctctaaacacaattattttctctcatctaaagtattgagctt-ctgggttacatctccggttatctttgagattattttgag 39292106  T
Q  218 ttgtt 222  Q
    |||||    
T  39292107 ttgtt 39292111  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 19930225 - 19930144
Alignment:
Q  143 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttct 224  Q
    |||||| ||||||||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||| |||  |||||||||    
T  19930225 cacaattattttctcttatccaaaatattgagttttgtgggttacatctcctgctatctttgagatagattcaagttgttct 19930144  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 42257017 - 42256930
Alignment:
Q  119 tctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagata 209  Q
    ||||||||||| |||| || |||  ||||| ||||||||| ||||||||||||||  ||||| ||||||||||| || |||||||||||||    
T  42257017 tctcacttcatattttcctatac--acaattattttctcttatccaaaatattgatttttct-ggttacatctcctgctatctttgagata 42256930  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 42253742 - 42253676
Alignment:
Q  143 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagata 209  Q
    |||||| ||||||||  ||| ||||||||||| ||||||||||||||||  || |||||||||||||    
T  42253742 cacaattattttctcatatctaaaatattgagttttctgggttacatcttctgctatctttgagata 42253676  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 11634382 - 11634278
Alignment:
Q  118 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 217  Q
    ||||||||| |||||| ||| |||  ||||| ||||||| ||||| ||||||||||| |||||| ||| ||||| ||| ||| ||| |||||||||||||    
T  11634382 ctctcactttatgtttctctatac--acaattattttctatcatc-aaaatattgag-tttctgagttgcatcttatgttattttt-agataaatttgag 11634288  T
Q  218 ttgttctgtt 227  Q
    ||||| ||||    
T  11634287 ttgttgtgtt 11634278  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 13010702 - 13010640
Alignment:
Q  163 caaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||| ||| ||||||||||||  |||||||| ||||||| ||||||||||||||||    
T  13010702 caaaatattgagtttt-tgggttacatcttctgatatctctgagatatatttgagttgttctgt 13010640  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 20058277 - 20058204
Alignment:
Q  118 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctc 192  Q
    ||||||||| |||| ||||| ||  |||||| ||||||||||||||||| |||||| |||||| |||||||||||    
T  20058277 ctctcactttatgtgtttctctaaacacaattattttctctcatccaaattattga-gtttctaggttacatctc 20058204  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 6667900 - 6667827
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||||||| |||||||  ||  ||||||||||||| |||||||  ||||||| ||||||| ||||||||    
T  6667900 attttctctcatccaatatattga-attcatgggttacatctcctgatatc--tgagatatatttgagctgttctgt 6667827  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 6671566 - 6671493
Alignment:
Q  150 attttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgt 226  Q
    |||||||||||||||| |||||||  ||  ||||||||||||| |||||||  ||||||| ||||||| ||||||||    
T  6671566 attttctctcatccaagatattga-attcatgggttacatctcctgatatc--tgagatatatttgagctgttctgt 6671493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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