View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3422_high_11 (Length: 242)

Name: NF3422_high_11
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3422_high_11
NF3422_high_11
[»] chr8 (4 HSPs)
chr8 (53-240)||(16585956-16586139)
chr8 (1-50)||(1789370-1789419)
chr8 (1-50)||(21185745-21185794)
chr8 (1-50)||(4327365-4327414)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-51)||(86621-86671)
scaffold0014 (14-50)||(82233-82269)
[»] chr6 (2 HSPs)
chr6 (1-51)||(19698311-19698361)
chr6 (1-47)||(6950191-6950237)
[»] chr3 (4 HSPs)
chr3 (1-51)||(11634675-11634725)
chr3 (4-51)||(19935631-19935678)
chr3 (1-51)||(42254144-42254195)
chr3 (1-50)||(42258266-42258314)
[»] chr2 (4 HSPs)
chr2 (1-51)||(2590085-2590135)
chr2 (1-50)||(34564342-34564391)
chr2 (1-50)||(18739577-18739626)
chr2 (14-51)||(35969734-35969771)
[»] chr7 (2 HSPs)
chr7 (1-51)||(39426674-39426724)
chr7 (1-46)||(11673603-11673648)
[»] chr1 (3 HSPs)
chr1 (1-51)||(1968416-1968466)
chr1 (1-50)||(47580079-47580128)
chr1 (7-51)||(1953335-1953379)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 16586139 - 16585956
Alignment:
Q  53 tgaactttatgttattcattcatgcaacaaattaatatgttgtcataaggacctctttcttcttttgaaaggggatatttgacacttgattaattgttag 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||    
T  16586139 tgaactttatgttattcattcatgcaacaaattaatatgttgtcataaggacctctttcttcttttgaaaggagatatttgacacttg----attgttag 16586044  T
Q  153 ataataatgcattgggttttaactattggacatttatattacaagttcgtaattcattattattttattgaaatccttatcgcctttg 240  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  16586043 ataataatgtattgggtttcaactattggacatttatatgacaagttcgtaattcattactattttattgaaacccttatcgtctttg 16585956  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1789370 - 1789419
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1789370 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 1789419  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21185745 - 21185794
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21185745 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 21185794  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4327365 - 4327414
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    |||||||||||||||| | || ||||||||||||||| ||||||||||||    
T  4327365 aacaacttttaataacctctgaaatataatatcaacttaaaaatacaaca 4327414  T

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Target: scaffold0014 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 86671 - 86621
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  86671 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaacaa 86621  T

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Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 82269 - 82233
Alignment:
Q  14 aacttttggaatataatatcaactcaaaaatacaaca 50  Q
    |||||||| ||||||||||||||||||||||||||||    
T  82269 aacttttgaaatataatatcaactcaaaaatacaaca 82233  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19698311 - 19698361
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19698311 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaacaa 19698361  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6950191 - 6950237
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaataca 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6950191 aacaacttttaataacttttgaaatataatatcaactcaaaaataca 6950237  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11634675 - 11634725
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11634675 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaacaa 11634725  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 19935631 - 19935678
Alignment:
Q  4 aacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  19935631 aacttttaataacttttgaaatataatatcaactcaaaaatacaacaa 19935678  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42254144 - 42254195
Alignment:
Q  1 aacaacttttaataacttttggaa-tataatatcaactcaaaaatacaacaa 51  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  42254144 aacaacttttaataactttttgaaatataatatcaactcaaaaatacaacaa 42254195  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42258266 - 42258314
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  42258266 aacaacttttaataacttttgaaatgtaatat-aactcaaaaatacaaca 42258314  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2590135 - 2590085
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2590135 aacaacttttaataacttttgaaatataatatcaactcaaaaatacaacaa 2590085  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34564391 - 34564342
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  34564391 aacaacttttaataacttttaaaatataatatcaactcaaaaatacaaca 34564342  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18739577 - 18739626
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  18739577 aacaacttttaataacttttaaaatataatatcaactcaaaactacaaca 18739626  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 35969734 - 35969771
Alignment:
Q  14 aacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  35969734 aacttttgaaatataatatcaactgaaaaatacaacaa 35969771  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39426674 - 39426724
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  39426674 aacaacttttaataacttttgaaatataatatcaacttaaaaatacaacaa 39426724  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11673648 - 11673603
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatac 46  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11673648 aacaaattttaataacttttgaaatataatatcaactcaaaaatac 11673603  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1968466 - 1968416
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  1968466 aacaacttttaataacttttgaaatataatatcaacttaaaaatacaacaa 1968416  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47580128 - 47580079
Alignment:
Q  1 aacaacttttaataacttttggaatataatatcaactcaaaaatacaaca 50  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  47580128 aacaatttttaataacttttgaaatataatatcaacttaaaaataaaaca 47580079  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 1953379 - 1953335
Alignment:
Q  7 ttttaataacttttggaatataatatcaactcaaaaatacaacaa 51  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||    
T  1953379 ttttaataacttttaaaatataatatcaacttaaaaatacaacaa 1953335  T

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