View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3422_high_3 (Length: 407)
Name: NF3422_high_3
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3422_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 5663415 - 5663734
Alignment:
| Q |
14 |
ataacaatgatattcttcaagttgttgttataattttttggaatgctattctgttttcattgtcatgtttgcttctttaattgtgttaagttgatttgtt |
113 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
5663415 |
ataataatgatattcttcaagttgatgttataattttttggaatgctattctgtttccattgtcatgtttgcttctttaactatgtcaagttgatttgtt |
5663514 |
T |
|
| Q |
114 |
gcagctgaagtggattggtctgctattactactggtggcgatgaaaggacgttggagtttgctagacttaaaatttgtatgtttggcattgagtagaatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5663515 |
gcagctgaagtggattggtctgctattactacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcattgagtagaatc |
5663614 |
T |
|
| Q |
214 |
caaaataggtttattctattgtacttgatttatttctaattgtttttatgctactgttgttgtgattttttatcaatgcagtcaattttcaatagagctg |
313 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5663615 |
aaaaacaggtttattctattgtccttgatttatttctaatggtttttatgctactgttgttgtcattttttatcaatgcagtcaattttcaatagagctg |
5663714 |
T |
|
| Q |
314 |
cttctgtatactgttaattg |
333 |
Q |
| |
|
|||||||||| | ||||||| |
|
|
| T |
5663715 |
cttctgtatatttttaattg |
5663734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 284
Target Start/End: Original strand, 35607896 - 35608099
Alignment:
| Q |
82 |
ttgcttctttaattgtgttaagttgatttgttgcagctgaagtggattggtctgctattactactggtggcgatgaaaggacgttggagtttgctagact |
181 |
Q |
| |
|
||||| ||| ||||||| ||| ||||||| ||||||||||||| |||||| ||||||| | ||||| | |||||||| ||||||| |||||||||| |
|
|
| T |
35607896 |
ttgctgcttaaattgtggtaaattgattttttgcagctgaagtagattggcctgctat---tgttggtgaccatgaaaggcagttggagcttgctagact |
35607992 |
T |
|
| Q |
182 |
taaaatttgtatgtttggcattgagtagaatccaaaataggtttattctattgtacttga-tttatttctaattgtttttatgctac---tgttgttgtg |
277 |
Q |
| |
|
||| |||||| ||| |||||||||| ||||||||| ||||||| |||| || ||||| ||| ||| | || ||||||||||||| || ||||||| |
|
|
| T |
35607993 |
gaaattttgtactttttgcattgagtacaatccaaaacaggtttaacctatggtccttgattttttttatgatagtttttatgctactattgctgttgtg |
35608092 |
T |
|
| Q |
278 |
atttttt |
284 |
Q |
| |
|
||||||| |
|
|
| T |
35608093 |
atttttt |
35608099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University