View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3422_high_6 (Length: 318)
Name: NF3422_high_6
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3422_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 36960556 - 36960399
Alignment:
| Q |
9 |
gaagaatatgtacatatgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagag |
108 |
Q |
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| T |
36960556 |
gaagaaaatgtacatatgaactagaattcaaaataaaaagtgtatttgaattttgaaggattttgctttgcaaaaggcagagaataattagatcaaagag |
36960457 |
T |
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| Q |
109 |
gccttgatgtcaattttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
166 |
Q |
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| T |
36960456 |
gccttgatgtcaattttacatttgatatcaagaaaatgtctgtaatttaatgttagtg |
36960399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 36960355 - 36960221
Alignment:
| Q |
184 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatnnnnnnnctaactagctaataaataaaacgtcatttcg |
283 |
Q |
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| T |
36960355 |
atgattgttgcttcttcattccattccaaaataaaaccaaatcggatcatagtatttttaatcaaaaaactaactagctaataaataaaaagtcatttcg |
36960256 |
T |
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| Q |
284 |
atctttaaatatgtcaagcgatctcactataatca |
318 |
Q |
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| T |
36960255 |
atctttaaatatgtcaagcgctctcactataatca |
36960221 |
T |
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