View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3422_high_8 (Length: 251)
Name: NF3422_high_8
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3422_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8265469 - 8265224
Alignment:
| Q |
1 |
ttgattttctttttatttgtagtttcttgttttaacgagaaaaattacatgagttgtataaatagttaatattgt---actatcatgatattatatgatg |
97 |
Q |
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| T |
8265469 |
ttgattttctttt-atttgtagtttcttgttttaacgagaaaaattacatgagttgtataaatagttaatattgttgtactatcatgatattatatgatg |
8265371 |
T |
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| Q |
98 |
ttatgtatatttggaattcacttcattaataatttactgtcattgaatgcttcagccaaatcttctatttaaacaataattcgnnnnnnnttgtatgcaa |
197 |
Q |
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| T |
8265370 |
atatgtatatttggaattcacttcattaatcatttacaatcattgaattcttcatccaaatcttctatttaaacaataattcgaaaaagattgtatgcaa |
8265271 |
T |
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| Q |
198 |
actaaagcaaataattaattggaaattttagaaccacctctgtgctc |
244 |
Q |
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| T |
8265270 |
actaaagcaaataattaattggaaatcttagaaccacctctgggctc |
8265224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 8258382 - 8258221
Alignment:
| Q |
12 |
tttatttgtagtttcttgttttaacgagaaaaattacatgagttgtataaatagttaatattgtactatcatgatattatatgatgttatgtatatttgg |
111 |
Q |
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| T |
8258382 |
tttatttgtagtttcttgttttaacaagaaaaattacatgagttatataaataattaatattgtac--tcatgatattatatg-----atgtatatttaa |
8258290 |
T |
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| Q |
112 |
aattcact--tcattaataatttactgtcattgaatgcttcagccaaatcttctatttaaacaataatt |
178 |
Q |
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| T |
8258289 |
aattcacttctcattaataatgtactgtcattgaattcttttgccaaatcttttatttaaacgataatt |
8258221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 8260462 - 8260358
Alignment:
| Q |
75 |
tactatcatgatattatatgatgttatgtatatttggaattcacttc--attaataatttactgt--cattgaatgcttcagccaaatcttctatttaaa |
170 |
Q |
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| T |
8260462 |
tactatcatgatattatatgatgt-----atatttaaaattcacttcttattaataatgtactgtgtcattgaattcttttgccaaatcttctatttaaa |
8260368 |
T |
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| Q |
171 |
caataattcg |
180 |
Q |
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| T |
8260367 |
caataattcg |
8260358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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