View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3422_low_13 (Length: 219)

Name: NF3422_low_13
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3422_low_13
NF3422_low_13
[»] chr7 (17 HSPs)
chr7 (1-208)||(34707069-34707277)
chr7 (1-208)||(44164710-44164918)
chr7 (1-157)||(10576677-10576834)
chr7 (30-209)||(32876526-32876706)
chr7 (1-153)||(34259526-34259679)
chr7 (30-165)||(24320435-24320571)
chr7 (37-208)||(29555941-29556114)
chr7 (1-165)||(29238110-29238275)
chr7 (1-142)||(29981080-29981221)
chr7 (1-141)||(19334527-19334669)
chr7 (39-142)||(17303119-17303224)
chr7 (39-142)||(33057662-33057766)
chr7 (39-160)||(10334177-10334301)
chr7 (39-139)||(9770682-9770782)
chr7 (39-139)||(26284383-26284483)
chr7 (39-118)||(15017817-15017896)
chr7 (39-165)||(43342415-43342533)
[»] chr5 (25 HSPs)
chr5 (1-208)||(38397551-38397759)
chr5 (1-208)||(23218438-23218646)
chr5 (1-165)||(6257377-6257542)
chr5 (1-208)||(37169000-37169208)
chr5 (1-205)||(39862454-39862659)
chr5 (1-156)||(15631618-15631775)
chr5 (1-160)||(16618537-16618697)
chr5 (1-142)||(8456930-8457072)
chr5 (39-142)||(10081164-10081268)
chr5 (32-142)||(614390-614501)
chr5 (35-165)||(36769075-36769207)
chr5 (39-142)||(9737986-9738092)
chr5 (37-142)||(25560330-25560436)
chr5 (36-141)||(27916160-27916266)
chr5 (37-160)||(42119621-42119747)
chr5 (35-142)||(6174764-6174873)
chr5 (1-142)||(29491381-29491521)
chr5 (39-141)||(33271275-33271377)
chr5 (47-142)||(11856314-11856410)
chr5 (35-142)||(3341121-3341228)
chr5 (35-142)||(29790220-29790326)
chr5 (39-136)||(10115185-10115283)
chr5 (39-139)||(10052505-10052606)
chr5 (70-118)||(19322058-19322106)
chr5 (95-142)||(33188403-33188450)
[»] chr3 (26 HSPs)
chr3 (1-206)||(40845884-40846090)
chr3 (1-160)||(21853198-21853358)
chr3 (1-208)||(44994935-44995144)
chr3 (10-165)||(32352843-32352999)
chr3 (1-209)||(13856051-13856260)
chr3 (1-208)||(5391411-5391618)
chr3 (3-165)||(8950473-8950636)
chr3 (47-208)||(23467507-23467670)
chr3 (1-142)||(20382538-20382679)
chr3 (35-160)||(1781761-1781889)
chr3 (35-142)||(43347337-43347445)
chr3 (35-142)||(3178723-3178830)
chr3 (35-142)||(10839381-10839489)
chr3 (36-160)||(36539631-36539758)
chr3 (39-160)||(54546904-54547027)
chr3 (39-160)||(19649377-19649502)
chr3 (35-141)||(22845363-22845469)
chr3 (39-142)||(8926785-8926889)
chr3 (35-142)||(46685785-46685891)
chr3 (39-142)||(33103763-33103866)
chr3 (39-140)||(51336231-51336332)
chr3 (64-138)||(47889748-47889824)
chr3 (76-142)||(48206873-48206940)
chr3 (36-142)||(6280361-6280467)
chr3 (34-99)||(27642723-27642788)
chr3 (39-160)||(19644332-19644458)
[»] chr2 (21 HSPs)
chr2 (1-206)||(42769725-42769931)
chr2 (2-208)||(14942012-14942219)
chr2 (1-208)||(19181501-19181709)
chr2 (5-160)||(29846443-29846599)
chr2 (1-208)||(14186405-14186613)
chr2 (1-206)||(40277255-40277461)
chr2 (57-142)||(1387311-1387396)
chr2 (39-137)||(6318463-6318563)
chr2 (36-142)||(33009691-33009799)
chr2 (1-137)||(3956596-3956733)
chr2 (39-141)||(43139766-43139870)
chr2 (44-141)||(41674716-41674815)
chr2 (35-141)||(14539705-14539812)
chr2 (81-157)||(3597914-3597991)
chr2 (39-142)||(40780074-40780179)
chr2 (39-142)||(2888060-2888164)
chr2 (39-141)||(28321708-28321811)
chr2 (1-73)||(3597857-3597929)
chr2 (83-141)||(32486264-32486323)
chr2 (70-142)||(23685406-23685479)
chr2 (70-141)||(25665244-25665316)
[»] chr4 (28 HSPs)
chr4 (1-206)||(1535726-1535932)
chr4 (4-208)||(49284310-49284515)
chr4 (30-208)||(25954703-25954882)
chr4 (30-208)||(34240946-34241125)
chr4 (36-208)||(37801266-37801439)
chr4 (47-208)||(52632471-52632633)
chr4 (1-142)||(36012153-36012293)
chr4 (1-139)||(16338180-16338318)
chr4 (1-208)||(35018889-35019096)
chr4 (47-160)||(46583554-46583668)
chr4 (3-160)||(17888519-17888679)
chr4 (1-142)||(31377409-31377550)
chr4 (35-142)||(20818586-20818694)
chr4 (34-136)||(54090206-54090308)
chr4 (4-93)||(36851357-36851446)
chr4 (35-142)||(46474013-46474121)
chr4 (32-142)||(11054472-11054586)
chr4 (39-142)||(9742538-9742642)
chr4 (99-208)||(16338309-16338419)
chr4 (69-142)||(322584-322658)
chr4 (35-135)||(10094394-10094495)
chr4 (39-141)||(12792236-12792339)
chr4 (36-118)||(47084056-47084138)
chr4 (34-142)||(50328815-50328924)
chr4 (39-141)||(35322709-35322812)
chr4 (39-142)||(19124743-19124847)
chr4 (70-118)||(5780790-5780838)
chr4 (1-45)||(46583518-46583562)
[»] chr8 (18 HSPs)
chr8 (1-165)||(21525354-21525519)
chr8 (1-208)||(22324549-22324757)
chr8 (1-208)||(35806747-35806955)
chr8 (1-160)||(42013873-42014033)
chr8 (1-206)||(42072383-42072589)
chr8 (1-165)||(33934336-33934501)
chr8 (1-165)||(26021391-26021557)
chr8 (41-142)||(24065293-24065394)
chr8 (35-142)||(19334802-19334910)
chr8 (28-142)||(43282845-43282960)
chr8 (47-142)||(21488086-21488181)
chr8 (35-110)||(16523158-16523233)
chr8 (35-141)||(16818974-16819083)
chr8 (34-142)||(10112066-10112175)
chr8 (36-108)||(16591377-16591449)
chr8 (72-142)||(34697427-34697498)
chr8 (39-119)||(2271238-2271318)
chr8 (37-102)||(2824185-2824250)
[»] chr6 (15 HSPs)
chr6 (1-208)||(24694618-24694826)
chr6 (1-165)||(14309766-14309930)
chr6 (2-208)||(9231822-9232029)
chr6 (1-208)||(13627494-13627701)
chr6 (14-136)||(1727913-1728035)
chr6 (34-138)||(13103118-13103223)
chr6 (39-142)||(28750655-28750759)
chr6 (39-142)||(34103705-34103808)
chr6 (35-142)||(27863719-27863827)
chr6 (68-142)||(11212691-11212765)
chr6 (35-106)||(24497575-24497646)
chr6 (68-142)||(11279560-11279634)
chr6 (113-208)||(11084563-11084659)
chr6 (1-88)||(11084664-11084750)
chr6 (70-110)||(8412717-8412757)
[»] chr1 (26 HSPs)
chr1 (4-207)||(3346740-3346944)
chr1 (1-208)||(42517261-42517473)
chr1 (1-165)||(49902464-49902629)
chr1 (1-160)||(5974989-5975149)
chr1 (1-165)||(7742746-7742911)
chr1 (1-208)||(10155983-10156191)
chr1 (1-165)||(48392373-48392538)
chr1 (1-165)||(47022698-47022863)
chr1 (47-208)||(29149561-29149723)
chr1 (1-160)||(38859850-38860012)
chr1 (47-208)||(23908238-23908400)
chr1 (35-142)||(10907649-10907757)
chr1 (35-142)||(42456591-42456699)
chr1 (39-137)||(5558334-5558431)
chr1 (39-138)||(26835361-26835461)
chr1 (35-142)||(30745363-30745471)
chr1 (35-142)||(30766814-30766922)
chr1 (38-142)||(30252748-30252854)
chr1 (41-142)||(13131916-13132017)
chr1 (68-142)||(45968687-45968761)
chr1 (40-105)||(37189697-37189762)
chr1 (58-142)||(44107412-44107497)
chr1 (40-142)||(14796895-14796998)
chr1 (40-142)||(14805769-14805872)
chr1 (39-140)||(26511639-26511739)
chr1 (101-142)||(8430508-8430550)
[»] scaffold0079 (2 HSPs)
scaffold0079 (1-139)||(54542-54680)
scaffold0079 (99-208)||(54441-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (39-142)||(34457-34561)
[»] scaffold0086 (1 HSPs)
scaffold0086 (39-118)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (70-115)||(85547-85592)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 34707277 - 34707069
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  34707277 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 34707178  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||          |||| ||||||||||||||||||||    
T  34707177 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttagaatattcctggc 34707078  T
Q  200 tccgccact 208  Q
    |||||||||    
T  34707077 tccgccact 34707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44164710 - 44164918
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||    
T  44164710 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggc 44164809  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| | ||||||||||||||||||    
T  44164810 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccggactttagaatattcctggc 44164909  T
Q  200 tccgccact 208  Q
    |||||||||    
T  44164910 tccgccact 44164918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10576834 - 10576677
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||| ||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  10576834 ccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 10576735  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgt 157  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10576734 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgt 10576677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 32876526 - 32876706
Alignment:
Q  30 cgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgctt 129  Q
    |||| |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32876526 cgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgctt 32876625  T
Q  130 gcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccactt 209  Q
    ||||||||||||| |||| ||||||||||||| ||||         |||| ||||||| ||||||||||||||||||||||    
T  32876626 gcaatttcttatgtacgctctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccactt 32876706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 34259679 - 34259526
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||| |||||||||||||  || | |||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  34259679 ccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 34259580  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataa 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34259579 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 24320435 - 24320571
Alignment:
Q  30 cgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgctt 129  Q
    |||| |||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320435 cgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgctt 24320534  T
Q  130 gcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  24320535 gcaatttcttatgtacgccctataaatgtgttgcaaa 24320571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 29555941 - 29556114
Alignment:
Q  37 aattttttg-caatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatt 135  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29555941 aattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgcttgcaatt 29556040  T
Q  136 tcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||| |||||||||||||||||| ||||         |||  ||||||| |||||||||||||||||||||    
T  29556041 tcttatgtacgccctataaatgtgttgcaaatttttttttgcctgggctttacaatattcctggctccgccact 29556114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 29238110 - 29238275
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||| ||||||||||||||||  || | |||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||      
T  29238110 ccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaa 29238209  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||    
T  29238210 aatttctttacattttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29981080 - 29981221
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||| ||||||||||||  || | |||| ||| | |||||||||||||||| ||||||||||||||||| ||||||||||  ||||||||||| |    
T  29981080 ccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggac 29981179  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  29981180 aatttctttatattttttattatttgcttgcaatttcttatg 29981221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 19334527 - 19334669
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||| ||||| || |||||||||  ||| |||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| |    
T  19334527 ccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggac 19334626  T
Q  101 aatttctttaca--ttttttattatttgcttgcaatttcttat 141  Q
    |||||||||| |  |||||||||||||||||||||||||||||    
T  19334627 aatttctttagattttttttattatttgcttgcaatttcttat 19334669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 17303119 - 17303224
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca--ttttttattatttgcttgcaattt 136  Q
    |||||||||||||||| | ||||| ||||||||||| |||||||||||| | |||||||||||||||||||| |  ||||||||||||||||||||||||    
T  17303119 ttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttattatttgcttgcaattt 17303218  T
Q  137 cttatg 142  Q
    ||||||    
T  17303219 cttatg 17303224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 33057662 - 33057766
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 137  Q
    |||||| ||||||||| | ||||||||||||||||| |||||||| |||||||||||||  ||||||||||| | |||||||||||||||||||||||||    
T  33057662 tttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttgcaatttc 33057761  T
Q  138 ttatg 142  Q
    |||||    
T  33057762 ttatg 33057766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 10334301 - 10334177
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacat-tttttattatttgcttgcaatttc 137  Q
    |||||||||||||||| | ||||| ||| ||||||| |||||||||| | |||||||||||||||||||||| || |||||| |||||||||||||||||    
T  10334301 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttc 10334202  T
Q  138 ttatg--acgccctataaatgtgtt 160  Q
    |||||  |  |||||||||||||||    
T  10334201 ttatgtaaacccctataaatgtgtt 10334177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 9770782 - 9770682
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    |||||||||||||||| | ||||||    ||||||| ||||||||||| |||| |||||| ||||||||||| | |||| ||||||||||||||||||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttct 9770683  T
Q  139 t 139  Q
    |    
T  9770682 t 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 26284383 - 26284483
Alignment:
Q  39 ttttttgcaatttcttgtataaa-tccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttc 137  Q
    |||||||||||||||| | |||| ||||| ||||||| ||||| ||||   |||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttttattattttcttgcaatttc 26284481  T
Q  138 tt 139  Q
    ||    
T  26284482 tt 26284483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 15017896 - 15017817
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt 118  Q
    |||||||||||||||| | ||||| ||| ||||||| |||||||||| | |||||||||| ||||||||||| |||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 43342533 - 43342415
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    |||||||||||||||| | ||||| ||| ||||||| ||||||||||||       |||||||||||||||| |||||||    |||  |||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccc------tttgggcaatttctttagatttttt----ttttattgcaatttct 43342444  T
Q  139 tatg--acgccctataaatgtgtttcaaa 165  Q
    ||||  |   |||||||||||||||||||    
T  43342443 tatgtaaacacctataaatgtgtttcaaa 43342415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 38397759 - 38397551
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38397759 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 38397660  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||          |||||||||||| ||||||||||||    
T  38397659 aatttctttacattttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaatttgttttttgcccaggctttataatattcctggc 38397560  T
Q  200 tccgccact 208  Q
    |||||||||    
T  38397559 tccgccact 38397551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 23218646 - 23218438
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||| ||||||||||||||  |||| |||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  23218646 ccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 23218547  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  23218546 aatttctttacattttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 23218447  T
Q  200 tccgccact 208  Q
    |||||||||    
T  23218446 tccgccact 23218438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6257377 - 6257542
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  6257377 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggc 6257476  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttat-gacgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  6257477 aatttctttacattttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaa 6257542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37169000 - 37169208
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||| |||  || | |||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  37169000 ccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 37169099  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||         |||| ||||||| ||||||||||||    
T  37169100 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaatttttttttgcccgggctttacaatattcctggc 37169199  T
Q  200 tccgccact 208  Q
    || ||||||    
T  37169200 tctgccact 37169208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39862454 - 39862659
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||   | | |||| ||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  39862454 ccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggc 39862553  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttat-gacgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||         |||||||||||| ||||||||||||    
T  39862554 aatttctttagattttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaatttttttttgcccaggctttacaatattcctggc 39862653  T
Q  200 tccgcc 205  Q
    ||||||    
T  39862654 tccgcc 39862659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 15631775 - 15631618
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccc-tataaattggg 99  Q
    ||||||||||||||||||||||  || | | || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||     
T  15631775 ccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattgga 15631676  T
Q  100 caatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15631675 caatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatg 15631618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 16618537 - 16618697
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||||| |  || | |||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |    
T  16618537 ccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggac 16618636  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtt 160  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16618637 aatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtt 16618697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8456930 - 8457072
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||  |||||||||  || | |||  |||||||||| ||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||    
T  8456930 ccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggc 8457029  T
Q  101 aatttctttaca-ttttttattatttgcttgcaatttcttatg 142  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  8457030 aatttctttagatttttttattatttgcttgcaatttcttatg 8457072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 10081268 - 10081164
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 137  Q
    |||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttc 10081169  T
Q  138 ttatg 142  Q
    |||||    
T  10081168 ttatg 10081164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 614390 - 614501
Alignment:
Q  32 ggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttg 130  Q
    |||||| |||||||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||||||    
T  614390 ggtcaatttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg 614489  T
Q  131 caatttcttatg 142  Q
    ||||||||||||    
T  614490 caatttcttatg 614501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 36769075 - 36769207
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 134  Q
    |||||||||||||||||||| | ||||| ||| ||||||| ||||||||||| |||| |||| ||||||||||||| |||||| ||||||||||||||||    
T  36769075 caaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttagatttttgattatttgcttgcaat 36769174  T
Q  135 ttcttatg--acgccctataaatgtgtttcaaa 165  Q
    ||| ||||  |  ||||||||||||||| ||||    
T  36769175 ttcatatgtaaacccctataaatgtgttgcaaa 36769207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 9737986 - 9738092
Alignment:
Q  39 ttttttgcaatttctt--gtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatt 135  Q
    |||||| |||||||||  ||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||  ||||||||||||||||    
T  9737986 tttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatt 9738085  T
Q  136 tcttatg 142  Q
    |||||||    
T  9738086 tcttatg 9738092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 25560330 - 25560436
Alignment:
Q  37 aattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatt-ttttattatttgcttgcaatt 135  Q
    |||||||| ||||||||| | ||||||| ||| ||||| ||||||||||  ||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  25560330 aatttttttcaatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttgcaatt 25560429  T
Q  136 tcttatg 142  Q
    |||||||    
T  25560430 tcttatg 25560436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 27916266 - 27916160
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaat 134  Q
    ||||||||||||||||||| | ||||| ||| ||||||| |||||||||| ||||||||||| |||||||| ||| | |||||||||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  135 ttcttat 141  Q
    |||||||    
T  27916166 ttcttat 27916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 42119747 - 42119621
Alignment:
Q  37 aattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatt 135  Q
    ||||||||| |||||||| | ||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||||||||| ||| ||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatt 42119648  T
Q  136 tcttatg--acgccctataaatgtgtt 160  Q
    |||||||  |  |||||||||||||||    
T  42119647 tcttatgtaaacccctataaatgtgtt 42119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 6174873 - 6174764
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccc--tataaattgggcaatttctttacattttttattatttgcttgca 132  Q
    ||||||||||| ||||||||   ||||| | | ||||||| |||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||    
T  6174873 caaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgca 6174774  T
Q  133 atttcttatg 142  Q
    ||||| ||||    
T  6174773 atttcctatg 6174764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29491381 - 29491521
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||| |||||| |  || ||| |  ||||| |||||||||||||| | |||||  |||||||||| |||||||| |||||||||||||| |    
T  29491381 ccggcgaccccggacactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatataa-cccctataaattggac 29491479  T
Q  101 aatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||    
T  29491480 aatt-ctttaaattttttgattatttgcttgcaatttcttatg 29491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 33271275 - 33271377
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    |||||| ||||||||| | ||||| ||  ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||    
T  33271275 ttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttattatttgtttgtaatttct 33271374  T
Q  139 tat 141  Q
    |||    
T  33271375 tat 33271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 11856410 - 11856314
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    |||||||| | |||||| || ||||||| ||||||||| | ||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatg 11856314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 3341121 - 3341228
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaatttt-ttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||| | | |||||||| |||||||| ||||||||||||||| ||||||||||  ||||| ||||||||||| |||    
T  3341121 caaattttttgcaatttcttatgtaaattc-tctgaatttttttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaa 3341219  T
Q  134 tttcttatg 142  Q
    ||| |||||    
T  3341220 ttttttatg 3341228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 29790220 - 29790326
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 134  Q
    |||| ||||| ||||||||| | ||||| | ||||||||| |||||||||||  ||||||||||||||||||||||  ||||| |||||||||||  |||    
T  29790220 caaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta-gtttttgattatttgcttttaat 29790318  T
Q  135 ttcttatg 142  Q
    ||||||||    
T  29790319 ttcttatg 29790326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 10115283 - 10115185
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaattt 136  Q
    ||||||||||||| || | ||||| ||| || |||| ||||||||||||| ||||||| | ||||||||||| ||||||| ||||||||||||||||||    
T  10115283 ttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaattatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 10052505 - 10052606
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||| ||||||||| | ||||||||| |||| |  ||||||||||  ||||||||| || |||||||||| | ||||  |||||||||||||||||||    
T  10052505 ttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagattatttgcttgcaatttc 10052604  T
Q  138 tt 139  Q
    ||    
T  10052605 tt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 19322058 - 19322106
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttctttacatttttt 118  Q
    ||||| |||||||||| |||||||||||||||||| ||||| |||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagatttttt 19322106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 33188403 - 33188450
Alignment:
Q  95 ttgggcaatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    ||||||||||||  || ||||||||||||||||||| |||||||||||    
T  33188403 ttgggcaatttcaataaattttttattatttgcttgtaatttcttatg 33188450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40845884 - 40846090
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||| |||||| |||||  |||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  40845884 ccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 40845983  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  40845984 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 40846083  T
Q  200 tccgcca 206  Q
    |||||||    
T  40846084 tccgcca 40846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 21853358 - 21853198
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||||| |  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  21853358 ccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggc 21853259  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtt 160  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21853258 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtt 21853198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44994935 - 44995144
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccct-ataaattggg 99  Q
    |||||||||||||| ||||||   || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  44994935 ccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattggg 44995034  T
Q  100 caatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctgg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| |||||||  ||||||||||    
T  44995035 caatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttactatattcctgg 44995134  T
Q  199 ctccgccact 208  Q
    ||||||||||    
T  44995135 ctccgccact 44995144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 32352999 - 32352843
Alignment:
Q  10 ccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttt 109  Q
    |||||||||||||  || | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32352999 ccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttcttt 32352900  T
Q  110 acattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  32352899 acattttttattatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13856260 - 13856051
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||| ||||||| |||  || | |||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |    
T  13856260 ccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggac 13856161  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||          |||  ||||||| ||||||||||||    
T  13856160 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcctgggctttacaatattcctggc 13856061  T
Q  200 tccgccactt 209  Q
    ||||||||||    
T  13856060 tccgccactt 13856051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 5391618 - 5391411
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||| |||||||||||  || | || | ||| |||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  5391618 ccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggac 5391519  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  5391518 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa-ttttttttgcccgggctttacaatattcctggc 5391420  T
Q  200 tccgccact 208  Q
    |||||||||    
T  5391419 tccgccact 5391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 8950473 - 8950636
Alignment:
Q  3 ggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaa 102  Q
    ||||||||||||||||||||  || |  ||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||    
T  8950473 ggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaa 8950572  T
Q  103 tttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||    
T  8950573 tttctttacattttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 23467507 - 23467670
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acg 145  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 23467606  T
Q  146 ccctataaatgtgtttc-aaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||||||||||| | |||         |||||||||||| |||||||||||||||||||||    
T  23467607 ccctataaatgtgttgcaaaaaaattttccgcccaggctttacaatattcctggctccgccact 23467670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 20382679 - 20382538
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||| |||  || | |||  ||||||||||  |||||||| | ||||||||||||||||| ||||||||||||||||||||||||     
T  20382679 ccggcgaccccgggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaacccctataaattggga 20382581  T
Q  101 aatttctttaca-ttttttattatttgcttgcaatttcttatg 142  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  20382580 aatttctttagatttttttattatttgcttgcaatttcttatg 20382538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 1781889 - 1781761
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  1781889 caaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaa 1781790  T
Q  134 tttcttatg--acgccctataaatgtgtt 160  Q
    |||| ||||  |  |||||||||||||||    
T  1781789 tttcgtatgtaaacccctataaatgtgtt 1781761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 43347337 - 43347445
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  43347337 caaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttgcaa 43347436  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  43347437 tttcttatg 43347445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 3178830 - 3178723
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 134  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||  |||||| |||||||||||||||    
T  3178830 caaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagttttttttttatttgcttgcaat 3178731  T
Q  135 ttcttatg 142  Q
    ||| ||||    
T  3178730 ttcgtatg 3178723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 10839381 - 10839489
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    |||||||||||||||||||| | |||||  || ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  10839381 caaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttgattatttgcttgcaa 10839480  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  10839481 tttcttatg 10839489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 36539758 - 36539631
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaat 134  Q
    ||||||| ||||||||||| | ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  36539758 aaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaaattttttgattatttgtttgcaat 36539659  T
Q  135 ttcttatg--acgccctataaatgtgtt 160  Q
    ||| ||||  |  |||||||||||||||    
T  36539658 ttcctatgtaaacccctataaatgtgtt 36539631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 54547027 - 54546904
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    ||||||||||||||||   ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttct 54546928  T
Q  139 tatg--acgccctataaatgtgtt 160  Q
    ||||  |  |||||||||||||||    
T  54546927 tatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 19649377 - 19649502
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt--attatttgcttgcaattt 136  Q
    ||||||| |||||||| | |||||| |||||||||| |||||||||||| |||||||||| ||||||||||| |||||||  ||||||||||||||||||    
T  19649377 ttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttggattatttgcttgcaattt 19649476  T
Q  137 cttatg--acgccctataaatgtgtt 160  Q
    ||||||  |  |||||||||||||||    
T  19649477 cttatgtaattccctataaatgtgtt 19649502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 22845363 - 22845469
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 134  Q
    |||||||||||||||||||| | ||||| |   | ||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  22845363 caaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaat 22845462  T
Q  135 ttcttat 141  Q
    || ||||    
T  22845463 tttttat 22845469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 8926889 - 8926785
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||||||||||| | | ||||| ||| ||||||| | ||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttc 8926790  T
Q  138 ttatg 142  Q
    |||||    
T  8926789 ttatg 8926785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 46685785 - 46685891
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 134  Q
    ||||||||||||| |||||| | ||||||||  | ||||| |||||||||| |||||||||| | ||||||||||| ||||||||||||||| |||||||    
T  46685785 caaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaat 46685883  T
Q  135 ttcttatg 142  Q
    ||||||||    
T  46685884 ttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 33103866 - 33103763
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    |||||||||||||||| | ||||| ||  | ||||| ||||||||  |||||||||||||  ||||| |||| ||||||||||||||||||| |||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttct 33103767  T
Q  139 tatg 142  Q
    ||||    
T  33103766 tatg 33103763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 51336332 - 51336231
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    ||||||||||||| || | ||||| |   ||||||||||||||||| |  |||||||| | ||||||||||| |||||||||||||| ||||||||||||    
T  51336332 ttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttgcaatttct 51336233  T
Q  139 ta 140  Q
    ||    
T  51336232 ta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 47889824 - 47889748
Alignment:
Q  64 cctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttg-caatttct 138  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||| | ||||||||||||| |||| ||||||||    
T  47889824 cctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttct 47889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 48206940 - 48206873
Alignment:
Q  76 ttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    ||||||||||||||||||||| | |||||| |||| ||||||| ||||||| ||||||||||||||||    
T  48206940 ttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatg 48206873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 6280361 - 6280467
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatt 135  Q
    ||||||| ||||||||||| | |||||  |  ||||||| ||||||||||| ||||||||| | |||||| |||| |||||| || |||||||||| |||    
T  6280361 aaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccatt 6280460  T
Q  136 tcttatg 142  Q
    | |||||    
T  6280461 ttttatg 6280467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 27642788 - 27642723
Alignment:
Q  34 tcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattggg 99  Q
    ||||||||||||||||||||| | ||||||| | ||||||| ||||||||| || |||||||||||    
T  27642788 tcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaatccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 19644332 - 19644458
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaa-tttctttacatttttt--attatttgcttgcaatt 135  Q
    ||||||| ||||| || | |||||  |||||||||||||||||||| |  |||||||||  ||| ||| |||| |||||||  |||||||| ||||||||    
T  19644332 ttttttgtaattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattttttttagattttttggattatttgattgcaatt 19644431  T
Q  136 tcttatg--acgccctataaatgtgtt 160  Q
    |||||||  |  |||||||||||||||    
T  19644432 tcttatgtaattccctataaatgtgtt 19644458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42769725 - 42769931
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  42769725 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 42769824  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  42769825 aatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 42769924  T
Q  200 tccgcca 206  Q
    |||||||    
T  42769925 tccgcca 42769931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 14942012 - 14942219
Alignment:
Q  2 cggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggca 101  Q
    |||||||||||| ||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  14942012 cggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggca 14942111  T
Q  102 atttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||         |||| ||||||| |||||||||||||    
T  14942112 atttctttacattttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggct 14942211  T
Q  201 ccgccact 208  Q
    ||||||||    
T  14942212 ccgccact 14942219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 19181709 - 19181501
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||| ||||||||| || |  ||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  19181709 ccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggc 19181610  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||         | || ||||||| ||||||||||||    
T  19181609 aatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgtccgggctttacaatattcctggc 19181510  T
Q  200 tccgccact 208  Q
    |||||||||    
T  19181509 tccgccact 19181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 29846599 - 29846443
Alignment:
Q  5 cgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatt 104  Q
    ||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  29846599 cgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatt 29846500  T
Q  105 tctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29846499 tctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtt 29846443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 14186405 - 14186613
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||| ||||||||||   | | |||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  14186405 ccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 14186504  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||         ||||  |||||| ||||||||||||    
T  14186505 aatttctttacactttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgagctttacaatattcctggc 14186604  T
Q  200 tccgccact 208  Q
    |||||||||    
T  14186605 tccgccact 14186613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40277255 - 40277461
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||| | |  || | |||| ||||||||||||||||| || | ||||||||||| ||||| ||||||||| |||||||||||||||    
T  40277255 ccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggc 40277354  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  40277355 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 40277454  T
Q  200 tccgcca 206  Q
    |||||||    
T  40277455 tccgcca 40277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 1387311 - 1387396
Alignment:
Q  57 ataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  1387311 ataaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatg 1387396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 6318463 - 6318563
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca--ttttttattatttgcttgcaattt 136  Q
    |||||| ||||||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaattt 6318562  T
Q  137 c 137  Q
    |    
T  6318563 c 6318563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 33009799 - 33009691
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttt--ttattatttgcttgcaa 133  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||| || |||||||||| ||||||||||| |||||  |||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  134 tttcttatg 142  Q
    ||| |||||    
T  33009699 ttttttatg 33009691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3956733 - 3956596
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||| |||||||||||||||||  || | |||  ||||   ||| |||||| || | ||||||||||||||||| |||||||||||||| |||||||| |    
T  3956733 ccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggac 3956634  T
Q  101 aatttcttt-acattttttattatttgcttgcaatttc 137  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  3956633 aatttctttaaaattttttattatttgcttgcaatttc 3956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 43139870 - 43139766
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca--ttttttattatttgcttgcaattt 136  Q
    |||||||||||||||| | ||| | ||| | ||||| |||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||    
T  43139870 ttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaattt 43139771  T
Q  137 cttat 141  Q
    |||||    
T  43139770 cttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 41674716 - 41674815
Alignment:
Q  44 tgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt--attatttgcttgcaatttcttat 141  Q
    ||||||||||| | |||||| || |||||||||||||||||||| |||||||||| ||||||||||| |||||||  | |||||||||||||||||||||    
T  41674716 tgcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttat 41674815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 14539705 - 14539812
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||| | ||| ||||||| |||||||||  |||||||||| ||||||||||||| | ||||||||||||| |||||||    
T  14539705 caaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaa 14539804  T
Q  134 tttcttat 141  Q
    ||||||||    
T  14539805 tttcttat 14539812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 3597914 - 3597991
Alignment:
Q  81 taaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgt 157  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  3597914 taaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgt 3597991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 40780179 - 40780074
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaac-ccctataaattgggcaatttctttacatttttta-ttatttgcttgcaattt 136  Q
    ||||||| |||||||| | ||||| ||| ||||||| |||||||||| ||||||||||| | |||||| |||| |||||||| |||||||||||||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaattt 40780080  T
Q  137 cttatg 142  Q
    ||||||    
T  40780079 cttatg 40780074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 2888164 - 2888060
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 137  Q
    ||||||| |||||||| | |||||| ||||||||||||||||||||| |||||||||||  |||||| |||| | |||||||||| ||||| ||||  ||    
T  2888164 ttttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttagatttttttattaattgctagcaaagtc 2888065  T
Q  138 ttatg 142  Q
    |||||    
T  2888064 ttatg 2888060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 28321708 - 28321811
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||||||||||||| | ||||| |   ||||| | |||||||||||| |||||||||||||||||| ||  ||||||| ||||||||||| |||||||    
T  28321708 ttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttc 28321807  T
Q  138 ttat 141  Q
    ||||    
T  28321808 ttat 28321811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3597857 - 3597929
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaatt 73  Q
    ||||||||||| ||||||||||  || | |||| |||||||||||||||||||||| ||||||||||| ||||    
T  3597857 ccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 32486323 - 32486264
Alignment:
Q  83 aacccctataaattgggcaatttctttacatttttta-ttatttgcttgcaatttcttat 141  Q
    ||||||||||||||||| ||||| || | |||||||| ||||||||||||||||||||||    
T  32486323 aacccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttat 32486264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 23685406 - 23685479
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    ||||| ||||||||| || |||||||| | |||||| |||| || |||| ||||||||||||||||||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatg 23685479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttat 141  Q
    ||||| ||||||||||   ||||||||||| ||||||||||  |||||| |||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1535932 - 1535726
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||| |||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1535932 ccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 1535833  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  1535832 aatttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 1535733  T
Q  200 tccgcca 206  Q
    |||||||    
T  1535732 tccgcca 1535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 49284515 - 49284310
Alignment:
Q  4 gcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaat 103  Q
    |||| |||||||||||| |  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  49284515 gcgaacccgggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaat 49284416  T
Q  104 ttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctcc 202  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||         |||| || |||| |||||||||||||||    
T  49284415 ttctttacattttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggttttacaatattcctggctcc 49284316  T
Q  203 gccact 208  Q
    ||||||    
T  49284315 gccact 49284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 25954882 - 25954703
Alignment:
Q  30 cgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgctt 129  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25954882 cgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttattatttgctt 25954783  T
Q  130 gcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||||||||| |||||||||||||||||| ||||         |||| ||||||| |||||||||||||||||||||    
T  25954782 gcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 25954703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 34241125 - 34240946
Alignment:
Q  30 cgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgctt 129  Q
    |||| |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241125 cgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgctt 34241026  T
Q  130 gcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||||||||| ||||||||||||||||||  |||         |||| ||||||| |||||||||||||||||||||    
T  34241025 gcaatttcttatgtacgccctataaatgtgttgtaaaattttttttgcccgggctttacaatattcctggctccgccact 34240946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 37801266 - 37801439
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatt 135  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37801266 aaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttttattatttgcttgcaatt 37801365  T
Q  136 tcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||| |||||||||||||||||| ||||         |||| ||||||| |||||||||||||||||||||    
T  37801366 tcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 37801439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 208
Target Start/End: Complemental strand, 52632633 - 52632471
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acg 145  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacg 52632534  T
Q  146 ccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||||||||||| ||||         |||| ||||||| |||||||||||||||||||||    
T  52632533 ccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 52632471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 36012153 - 36012293
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||| ||||||||| |  || |||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  36012153 ccggcgaccctgggcactcgtcg-ggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 36012251  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  36012252 aatttctttacattttttattatttgcttgcaattttttatg 36012293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 16338180 - 16338318
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||| |||||  | || |||| ||| ||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||| |    
T  16338180 ccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggac 16338279  T
Q  101 aatttctttacattttttattatttgcttgcaatttctt 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16338280 aatttctttacattttttattatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35019096 - 35018889
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||| |||||||||||  || |  ||| |||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| |||||||| ||     
T  35019096 ccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaatcc-tatgaatttcttatataaacccttataaattaggt 35018998  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||         | || ||||||| ||||||||||||    
T  35018997 aatttctttacattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaatttttttttgtccgggctttacaatattcctggc 35018898  T
Q  200 tccgccact 208  Q
    |||||||||    
T  35018897 tccgccact 35018889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 46583554 - 46583668
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acg 145  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 46583653  T
Q  146 ccctataaatgtgtt 160  Q
    || ||||||||||||    
T  46583654 ccatataaatgtgtt 46583668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 17888519 - 17888679
Alignment:
Q  3 ggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaa 102  Q
    ||||||||||||||||||||  || | |||  |||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  17888519 ggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaa 17888618  T
Q  103 tttctttaca-ttttttattatttgcttgcaatttcttatg--acgccctataaatgtgtt 160  Q
    |||||||| | ||||||||||||||||||||||||||||||  |  |||||||||||||||    
T  17888619 tttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgtt 17888679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31377550 - 31377409
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||  |||||||||| ||||||||| | ||||||||||||||||| |||||||| || |||||||||||||    
T  31377550 ccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggc 31377452  T
Q  101 aatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    |||||||||| ||||||| | ||||||||||||||||||||||    
T  31377451 aatttctttagattttttaactatttgcttgcaatttcttatg 31377409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 20818694 - 20818586
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||| |||||| |||| ||||||| |||||||| ||||||    
T  20818694 caaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgcaa 20818595  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  20818594 tttcttatg 20818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 54090308 - 54090206
Alignment:
Q  34 tcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaa 133  Q
    ||||||||||||||||| ||| | ||||||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||    
T  54090308 tcaaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaa 54090209  T
Q  134 ttt 136  Q
    |||    
T  54090208 ttt 54090206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 36851357 - 36851446
Alignment:
Q  4 gcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataa 93  Q
    |||||||||||||||||||| || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  36851357 gcgaccccgggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 46474121 - 46474013
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttt-tattatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||||  ||||||||||| |||||| ||||||||||||| ||    
T  46474121 caaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatttgcttgtaa 46474022  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  46474021 tttcttatg 46474013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 11054586 - 11054472
Alignment:
Q  32 ggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttta-catttttt---attatttgc 127  Q
    |||| |||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||  |||||||    ||||||||    
T  11054586 ggtccaattttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgc 11054487  T
Q  128 ttgcaatttcttatg 142  Q
    |||||||||||||||    
T  11054486 ttgcaatttcttatg 11054472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 9742538 - 9742642
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||| ||||||||| | ||||| ||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttc 9742637  T
Q  138 ttatg 142  Q
    |||||    
T  9742638 ttatg 9742642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 16338309 - 16338419
Alignment:
Q  99 gcaatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||          |||| ||||||| |||||| |||    
T  16338309 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 16338408  T
Q  198 gctccgccact 208  Q
    |||||||||||    
T  16338409 gctccgccact 16338419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 322584 - 322658
Alignment:
Q  69 gaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatg 322658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 10094394 - 10094495
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    ||||||||||| |||||||| | |||||  || ||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||    
T  10094394 caaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaa 10094493  T
Q  134 tt 135  Q
    ||    
T  10094494 tt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 12792236 - 12792339
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttt-tattatttgcttgcaatttc 137  Q
    ||||||| |||||||| | |||||  || ||||||| ||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||| ||||||    
T  12792236 ttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttagatttttagattatttgcttgaaatttc 12792335  T
Q  138 ttat 141  Q
    ||||    
T  12792336 ttat 12792339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 47084138 - 47084056
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt 118  Q
    ||||||||||||||||||| | |||||  || ||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  47084138 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 50328924 - 50328815
Alignment:
Q  34 tcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgca 132  Q
    |||| |||||||||||||||| | ||||| ||| | ||||| ||||||||||| ||||||||||| ||||||||||| | ||||||||||||  ||||||    
T  50328924 tcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttattattcacttgca 50328825  T
Q  133 atttcttatg 142  Q
    |||| |||||    
T  50328824 attttttatg 50328815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 35322709 - 35322812
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    ||||||| ||||| || |||||||  || ||||| | ||||||||||| ||||||||||  ||||||||||| ||||||| |||||||||||||||||||    
T  35322709 ttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttc 35322808  T
Q  138 ttat 141  Q
    ||||    
T  35322809 ttat 35322812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 19124743 - 19124847
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 137  Q
    |||||||||||||||| | ||||| ||| ||||||| ||||||||||  || |||||||  ||||||||||| | ||||||||||||| ||| |||||||    
T  19124743 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttc 19124842  T
Q  138 ttatg 142  Q
    |||||    
T  19124843 ttatg 19124847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 5780790 - 5780838
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttctttacatttttt 118  Q
    ||||| ||||||||| || |||||||||||||||||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttt 5780838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46583518 - 46583562
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttg 45  Q
    ||||||||||||||||||||||  || | ||||||||||||||||    
T  46583518 ccggcgaccccgggcactcgcccgggctccgggtcaaattttttg 46583562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21525519 - 21525354
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||| |||||||||||||||||  || | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  21525519 ccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggac 21525420  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  21525419 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22324757 - 22324549
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||| ||||||||||||||||  || | |||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22324757 ccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggc 22324658  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||          |||| ||||||| ||||||||||||    
T  22324657 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggc 22324558  T
Q  200 tccgccact 208  Q
    |||||||||    
T  22324557 tccgccact 22324549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35806955 - 35806747
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||||| |  || | |||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||    
T  35806955 ccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggc 35806856  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||         |||| | ||||||||||||||||||    
T  35806855 aatttctttacattttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaatttttttttgcccggactttagaatattcctggc 35806756  T
Q  200 tccgccact 208  Q
    |||||||||    
T  35806755 tccgccact 35806747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 42014033 - 42013873
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||||| | |  ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  42014033 ccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggc 42013934  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtt 160  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42013933 aatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtt 42013873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42072589 - 42072383
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  42072589 ccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggac 42072490  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |  |||||||||||| ||||         |||| ||||||| ||||||||||||    
T  42072489 aatttctttacattttttattatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 42072390  T
Q  200 tccgcca 206  Q
    |||||||    
T  42072389 tccgcca 42072383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 33934336 - 33934501
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | | || |||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||    
T  33934336 ccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggc 33934435  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  33934436 aatttttttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 33934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26021557 - 26021391
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||| ||||||||||||| |||  || | || | |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||     
T  26021557 ccggtgaccccgggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggt 26021458  T
Q  101 aatttctttacatt-ttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  26021457 aatttctttacatttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 24065394 - 24065293
Alignment:
Q  41 ttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttctta 140  Q
    |||||||||||||  |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  24065394 ttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttctttagcttttttattatttgcttgcaatttctta 24065295  T
Q  141 tg 142  Q
    ||    
T  24065294 tg 24065293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 19334910 - 19334802
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatt-ttttattatttgcttgcaa 133  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||| | ||||||||||| ||| ||||||||||||||| |||    
T  19334910 caaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaa 19334811  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  19334810 tttcttatg 19334802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 43282845 - 43282960
Alignment:
Q  28 ttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttta-cattttttattatttg 126  Q
    ||||| ||||||||||| ||||||||| | ||||| | | ||||||| ||||||||| |||||||||||||| |||||| |||  | |||||||||||||    
T  43282845 ttcggctcaaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttg 43282944  T
Q  127 cttgcaatttcttatg 142  Q
    ||||| ||||||||||    
T  43282945 cttgctatttcttatg 43282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 21488181 - 21488086
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    |||||||||| ||||| ||| ||||||| ||||| ||||||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||    
T  21488181 aatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttttattatt-gcttgcaatttcttatg 21488086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 16523233 - 16523158
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttta 110  Q
    |||||||||| ||||||| | | ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  16523233 caaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaattgggcaacttcttta 16523158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 16818974 - 16819083
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttta---cattttttattatttgcttgc 131  Q
    |||||||||||||||||||| | |||||| |  ||||||| |||||||||||||||||||||||| ||||||| ||     | |||||||||||||||||    
T  16818974 caaattttttgcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttgc 16819073  T
Q  132 aatttcttat 141  Q
    ||||| ||||    
T  16819074 aattttttat 16819083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 10112175 - 10112066
Alignment:
Q  34 tcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgca 132  Q
    |||| ||||||||||||| || | ||||| ||| | ||||| |||||||||| | |||||||||| ||||||||||  ||||||| |||||||  |||||    
T  10112175 tcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgca 10112076  T
Q  133 atttcttatg 142  Q
    ||||||||||    
T  10112075 atttcttatg 10112066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 16591377 - 16591449
Alignment:
Q  36 aaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctt 108  Q
    ||||||||||||||||||| | |||||  ||| |||||| ||||||||| | |||||||||||||||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 34697427 - 34697498
Alignment:
Q  72 ttttttatataaacccctataaattgggcaatttctttacatttt-ttattatttgcttgcaatttcttatg 142  Q
    ||||||||||||| | |||||||||| | ||||||||||  |||| ||||||||||||||||||||||||||    
T  34697427 ttttttatataaatctctataaattgagaaatttctttaattttttttattatttgcttgcaatttcttatg 34697498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 2271318 - 2271238
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttta 119  Q
    |||||||||||||||| | ||||||    ||||||| ||||||||||||||||| ||| || |||||||||| ||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagatttttta 2271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 2824185 - 2824250
Alignment:
Q  37 aattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaa 102  Q
    ||||||||||||||| || | ||||| ||| | ||||| |||||||| ||| ||||||||||||||    
T  2824185 aattttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaattgggcaa 2824250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 24694618 - 24694826
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||| |||| |||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  24694618 ccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggc 24694717  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| ||||||| ||||||||||||    
T  24694718 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggc 24694817  T
Q  200 tccgccact 208  Q
    |||||||||    
T  24694818 tccgccact 24694826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 14309766 - 14309930
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||| | ||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  14309766 ccggcgaccccagacactcgccc-ggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggc 14309864  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  14309865 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 9231822 - 9232029
Alignment:
Q  2 cggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggca 101  Q
    |||||||||||||||||||||  || | |||| ||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  9231822 cggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggca 9231921  T
Q  102 atttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||          |||| ||||||| |||||||||||||    
T  9231922 atttctttacattttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggct 9232021  T
Q  201 ccgccact 208  Q
    ||||||||    
T  9232022 ccgccact 9232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13627701 - 13627494
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||  ||||||| |  || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||    
T  13627701 ccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagc 13627602  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| |||| ||||         |||| ||||||||||||||||||||    
T  13627601 aatttctttacattttttattatttgcttgtactttcttatgtacgtcctataaatatgttgcaaa-atttttttgcccgggctttagaatattcctggc 13627503  T
Q  200 tccgccact 208  Q
    |||||||||    
T  13627502 tccgccact 13627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 1727913 - 1728035
Alignment:
Q  14 gcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacat 113  Q
    ||||||||| ||| | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 1728012  T
Q  114 tttttattatttgcttgcaattt 136  Q
    |||||||||||| ||||||||||    
T  1728013 tttttattatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 13103118 - 13103223
Alignment:
Q  34 tcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgca 132  Q
    |||||||||||||||||| || | ||||| ||| ||||||| |||||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||    
T  13103118 tcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgca 13103217  T
Q  133 atttct 138  Q
    ||||||    
T  13103218 atttct 13103223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 28750655 - 28750759
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||||||||||||| | ||||| | | ||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||    
T  28750655 ttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgattatttgcttgtaatttc 28750754  T
Q  138 ttatg 142  Q
    |||||    
T  28750755 ttatg 28750759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 34103808 - 34103705
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    ||||||| ||||| || | ||||| ||| ||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  34103808 ttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttct 34103709  T
Q  139 tatg 142  Q
    ||||    
T  34103708 tatg 34103705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 27863827 - 27863719
Alignment:
Q  35 caaattttttgcaattt-cttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaa 133  Q
    |||| |||||||||||| ||| | |||||  || ||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||    
T  27863827 caaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaa 27863728  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  27863727 tttcttatg 27863719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 11212765 - 11212691
Alignment:
Q  68 tgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatg 11212691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 24497575 - 24497646
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttc 106  Q
    ||||||||||||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  24497575 caaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 11279634 - 11279560
Alignment:
Q  68 tgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||||||||||  | |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatg 11279560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 11084659 - 11084563
Alignment:
Q  113 ttttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| | ||||| |||||||||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccact 11084563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11084750 - 11084664
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccc 88  Q
    |||| ||||||||||| |||||  |||| || | ||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  11084750 ccggtgaccccgggca-tcgcccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 8412717 - 8412757
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttcttta 110  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttcttta 8412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 3346944 - 3346740
Alignment:
Q  4 gcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaat 103  Q
    |||| ||||||||||||||   | |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  3346944 gcgatcccgggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaat 3346845  T
Q  104 ttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctcc 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||| ||||||| |||||||||||||||    
T  3346844 ttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctcc 3346745  T
Q  203 gccac 207  Q
    |||||    
T  3346744 gccac 3346740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42517261 - 42517473
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaac----ccctataaatt 96  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||    |||||||||||    
T  42517261 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaatt 42517360  T
Q  97 gggcaatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         || | ||||||| ||||||||    
T  42517361 gggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcacgggctttacaatattcc 42517460  T
Q  196 tggctccgccact 208  Q
    |||||||||||||    
T  42517461 tggctccgccact 42517473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 49902629 - 49902464
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||| ||||||||||||   || | |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  49902629 ccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggc 49902530  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  49902529 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 5975149 - 5974989
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||    
T  5975149 ccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggc 5975050  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtt 160  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5975049 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgtt 5974989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7742746 - 7742911
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | || |  || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  7742746 ccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggc 7742845  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7742846 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10155983 - 10156191
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| ||| |||||||||||||||||| ||||| ||||||||||| ||||||||||  ||||||||||| |    
T  10155983 ccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggac 10156082  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggc 199  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||         |||||||||||| |||||| |||||    
T  10156083 aatttctttatattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccaggctttacaatatttctggc 10156182  T
Q  200 tccgccact 208  Q
    |||||||||    
T  10156183 tccgccact 10156191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 48392373 - 48392538
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||| ||||||||||||  || | || | ||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  48392373 ccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggc 48392472  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  48392473 aatttcattacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 47022863 - 47022698
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||| |||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||| |||    
T  47022863 ccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggc 47022764  T
Q  101 aatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaa 165  Q
    |||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||| |||| ||||    
T  47022763 aatttctttatattttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 29149561 - 29149723
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acg 145  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacg 29149660  T
Q  146 ccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||| ||||||| ||||         |||| | ||||| |||||||||||||||||||||    
T  29149661 ccctatacatgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccact 29149723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 38860012 - 38859850
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    ||||||||||||||||||||||  || | |||  |||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||    
T  38860012 ccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggc 38859913  T
Q  101 aatttctttaca-ttttttattatttgcttgcaatttcttatg--acgccctataaatgtgtt 160  Q
    ||||| |||| | ||||||||||||||||||||||||||||||  |  |||||||||||||||    
T  38859912 aatttttttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgtt 38859850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 208
Target Start/End: Complemental strand, 23908400 - 23908238
Alignment:
Q  47 aatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg-acg 145  Q
    ||||| |||| ||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacg 23908301  T
Q  146 ccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctggctccgccact 208  Q
    ||||||||||||||| |||          |||| ||||||| |||||||||||||||||||||    
T  23908300 ccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggctccgccact 23908238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 10907649 - 10907757
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    |||||||||||||||||||| | ||||| ||| ||||||| ||||||||||||||||||||  | ||||||||||| ||||||| |||||||||||||||    
T  10907649 caaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattatttgcttgcaa 10907748  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  10907749 tttcttatg 10907757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 42456699 - 42456591
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttcttt-acattttttattatttgcttgcaa 133  Q
    |||||||||||| ||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |   |||||||| | |||||||    
T  42456699 caaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaa 42456600  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  42456599 tttcttatg 42456591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 5558431 - 5558334
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttc 137  Q
    |||||||||||||||| | |||| || |  |||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  5558431 ttttttgcaatttcttatgtaaa-ccttccgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 26835461 - 26835361
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    ||||||||||||| || | ||||| | ||||||||| |||||||||| |||||||||||  |||||| |||| ||||||| |||||||||||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttc 26835362  T
Q  138 t 138  Q
    |    
T  26835361 t 26835361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 30745471 - 30745363
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    ||||| ||||||||||| || | |||||  || ||||||| || |||||| ||||||||||||| ||||||||||| ||||||| ||||||| |||||||    
T  30745471 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30745372  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  30745371 tttcttatg 30745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 30766922 - 30766814
Alignment:
Q  35 caaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 133  Q
    ||||| ||||||||||| || | |||||  || ||||||| || |||||| ||||||||||||| ||||||||||| ||||||| ||||||| |||||||    
T  30766922 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30766823  T
Q  134 tttcttatg 142  Q
    |||||||||    
T  30766822 tttcttatg 30766814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 30252748 - 30252854
Alignment:
Q  38 attttttgcaatttcttgtataaatccctatgaatttt-ttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatt 135  Q
    |||||||||||||| || |||||||   | |||||||| ||||||||| ||||||||||| | ||| ||||||| ||||||| |||||||||||||||||    
T  30252748 attttttgcaattttttatataaatttttctgaatttttttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatt 30252847  T
Q  136 tcttatg 142  Q
    |||||||    
T  30252848 tcttatg 30252854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 13132017 - 13131916
Alignment:
Q  41 ttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttctta 140  Q
    ||||| |||||||| | ||||| ||| | ||||||||||||||| | ||||||||||| |||||||||||  |||||  |||| | ||||||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttctta 13131918  T
Q  141 tg 142  Q
    ||    
T  13131917 tg 13131916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 45968761 - 45968687
Alignment:
Q  68 tgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatg 142  Q
    |||||||||||||||| | | |||||||||| |||||| | || |||||| ||||||| ||||||||||||||||    
T  45968761 tgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaatttcttatg 45968687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 37189762 - 37189697
Alignment:
Q  40 tttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaattt 105  Q
    ||||||||||||||| | |||||| |||||||||| ||||||||| | ||||||||||| ||||||    
T  37189762 tttttgcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 44107412 - 44107497
Alignment:
Q  58 taaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatg 142  Q
    ||||| ||| ||| |||||||||||||||||||||||||    |||||||| | ||||||| ||||||| ||||||||||||||||    
T  44107412 taaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatg 44107497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 14796998 - 14796895
Alignment:
Q  40 tttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttt-tattatttgcttgcaatttct 138  Q
    |||||||||||| || | ||||| ||| ||||||| ||||||| || | |||||||| ||| ||| ||||| ||||||  | ||||||||||||||||||    
T  14796998 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14796899  T
Q  139 tatg 142  Q
    ||||    
T  14796898 tatg 14796895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 14805872 - 14805769
Alignment:
Q  40 tttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttt-tattatttgcttgcaatttct 138  Q
    |||||||||||| || | ||||| ||| ||||||| ||||||| || | |||||||| ||| ||| ||||| ||||||  | ||||||||||||||||||    
T  14805872 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14805773  T
Q  139 tatg 142  Q
    ||||    
T  14805772 tatg 14805769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 26511639 - 26511739
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 138  Q
    |||||||||||||||| | |||| |||  ||||||| |||||||||  ||| |||||||   |||||||||| |||||| ||||||| ||| ||||||||    
T  26511639 ttttttgcaatttcttatgtaaa-ccccctgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgattatttacttacaatttct 26511737  T
Q  139 ta 140  Q
    ||    
T  26511738 ta 26511739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 8430508 - 8430550
Alignment:
Q  101 aatttctttacatttt-ttattatttgcttgcaatttcttatg 142  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  8430508 aatttctttaaatttttttattatttgcttgcaatttcttatg 8430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 54680 - 54542
Alignment:
Q  1 ccggcgaccccgggcactcgcctaggtttcgggtcaaattttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggc 100  Q
    |||||||||||||||| |||||  | || |||| ||| ||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||| |    
T  54680 ccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggac 54581  T
Q  101 aatttctttacattttttattatttgcttgcaatttctt 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54580 aatttctttacattttttattatttgcttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 54551 - 54441
Alignment:
Q  99 gcaatttctttacattttttattatttgcttgcaatttcttatg-acgccctataaatgtgtttcaaannnnnnnnngcccaggctttagaatattcctg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||          |||| ||||||| |||||| |||    
T  54551 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 54452  T
Q  198 gctccgccact 208  Q
    |||||||||||    
T  54451 gctccgccact 54441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 34457 - 34561
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 137  Q
    |||||||||||||||| | ||||||||| |||||| |||||||||| | ||||||||||| || |||||||| ||||||| ||||||||||| |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttc 34556  T
Q  138 ttatg 142  Q
    |||||    
T  34557 ttatg 34561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 20836 - 20915
Alignment:
Q  39 ttttttgcaatttcttgtataaatccctatgaattttttatataaacccctataaattgggcaatttctttacatttttt 118  Q
    |||||||||||||||| | ||||| ||| ||||||| ||||||||| | ||||||||||| |||||| |||| |||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagatttttt 20915  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 85592 - 85547
Alignment:
Q  70 aattttttatataaacccctataaattgggcaatttctttacattt 115  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttctttacattt 85547  T

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