View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3422_low_2 (Length: 474)

Name: NF3422_low_2
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3422_low_2
NF3422_low_2
[»] chr7 (9 HSPs)
chr7 (4-272)||(11381307-11381591)
chr7 (1-273)||(11404706-11404997)
chr7 (372-462)||(11381691-11381781)
chr7 (386-462)||(11405104-11405180)
chr7 (56-269)||(3940197-3940411)
chr7 (85-137)||(27866871-27866922)
chr7 (92-157)||(5279733-5279798)
chr7 (92-137)||(27543686-27543730)
chr7 (64-136)||(5283315-5283387)
[»] chr8 (5 HSPs)
chr8 (372-455)||(2870171-2870254)
chr8 (207-273)||(2870000-2870068)
chr8 (388-430)||(18701107-18701149)
chr8 (224-273)||(28637368-28637417)
chr8 (93-149)||(18700844-18700900)
[»] chr3 (3 HSPs)
chr3 (372-464)||(13825380-13825474)
chr3 (166-271)||(13825166-13825273)
chr3 (372-408)||(54315264-54315300)
[»] scaffold0013 (3 HSPs)
scaffold0013 (182-273)||(62483-62574)
scaffold0013 (372-447)||(62678-62752)
scaffold0013 (27-137)||(86869-86979)
[»] chr2 (6 HSPs)
chr2 (372-439)||(26172823-26172890)
chr2 (372-438)||(20725626-20725691)
chr2 (372-431)||(21833617-21833676)
chr2 (388-430)||(15738151-15738193)
chr2 (374-428)||(29902389-29902443)
chr2 (93-149)||(15737888-15737944)
[»] scaffold0097 (1 HSPs)
scaffold0097 (372-438)||(29455-29520)
[»] chr6 (1 HSPs)
chr6 (92-137)||(19802598-19802644)
[»] chr4 (3 HSPs)
chr4 (92-137)||(39866128-39866173)
chr4 (92-137)||(43036441-43036485)
chr4 (374-430)||(16347023-16347079)
[»] scaffold0079 (1 HSPs)
scaffold0079 (374-430)||(45782-45838)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 11381307 - 11381591
Alignment:
Q  4 tgcatgcatgactaaagagtaagaaaattgcttatttgatattaagaagtttctattaacacatggaaaatacgactttgtcctcagaggtagttaacta 103  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11381307 tgcatgcatgactaaagagtaagaaaattgcttttttgacattaagaacttcctattaacacatggaaaatatgactttgtcctcagaggtagttaacta 11381406  T
Q  104 ccgttggatgatccggcagcagttaact---------------accgctacagccagcagtagtcaactcctgttgtgttcctagttcaaattccaatag 188  Q
    ||||||||||||| ||||||||||||||               ||||||| ||||||||||||| |||| |||||| |||||| ||||||||||||||||    
T  11381407 ccgttggatgatcgggcagcagttaactatcgttgaggtcagcaccgctatagccagcagtagttaactactgttgcgttcctggttcaaattccaatag 11381506  T
Q  189 ctctctctttcccttattccccacgtttgtacatgtttatacatactattttgaacaca-tttttcactcattttcatccaattt 272  Q
    || |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11381507 ctttctccttccctttttccccacgtttgaacatgtttatacatactattttgaacacattttttcactcattttcatccaattt 11381591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11404706 - 11404997
Alignment:
Q  1 cactgcatgcatgactaaagagtaagaaaattgcttatttgatattaagaagtttctattaacacatggaaaatacgactttgtcctcagaggtagttaa 100  Q
    |||| ||||||||||||| ||||||||||||||||| || || |||||||| || ||||||||||||||||||||| |||||||||| |||||||||||     
T  11404706 cactacatgcatgactaa-gagtaagaaaattgctttttagacattaagaacttcctattaacacatggaaaatacaactttgtcctgagaggtagttac 11404804  T
Q  101 ctaccgttggatgatccggcagcagttaactacc---------------gctacagcca----gcagtagtcaactcctgttgtgttcctagttcaaatt 181  Q
    ||| ||||||||||||||||||||||||||||||               ||||||||||    | | |||| |||| ||||||  ||||| |||||||||    
T  11404805 ctatcgttggatgatccggcagcagttaactaccgctgaggtcagcactgctacagccagtatgtaatagttaactactgttgcattcctggttcaaatt 11404904  T
Q  182 ccaatagctctctctttcccttattccccacgtttgtacatgtttatacatactattttgaacaca-tttttcactcattttcatccaatttc 273  Q
    ||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11404905 ccaatagctttctccttccctttttccccacgtttgaacatgtttatacatactattttgaacacattttttcactcattttcatccaatttc 11404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 11381691 - 11381781
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaacctaatgatcaaccctgctgccta 462  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11381691 tcacaaggtatgaataatgtcataataatacatcaccatcatcaaagtcaaaatgtacataaaaaaacctaatgatcaaccctgctgccta 11381781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 11405104 - 11405180
Alignment:
Q  386 taatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaacctaatgatcaaccctgctgccta 462  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11405104 taatgtcataataatacatcaccatcatcaaagtcaaaatgtacataaaaaaacctaatgatcaaccctgctgccta 11405180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 269
Target Start/End: Complemental strand, 3940411 - 3940197
Alignment:
Q  56 ctattaacacatggaaaatacgactttgtcctcagaggtagttaactaccgttggatgatccggcagcagttaactaccgctacagccagcagtagtcaa 155  Q
    ||||||| ||||||||||||| | ||| || |||||||||||||| |||||||||| ||| || ||||||| ||||||||||||||||||||||||| ||    
T  3940411 ctattaaaacatggaaaatacaaatttatcttcagaggtagttaattaccgttggaagattcgacagcagtaaactaccgctacagccagcagtagttaa 3940312  T
Q  156 ctcctgttgtgttcctagttcaaattccaatagctctctctttcccttattccccacgtttgtacatgtttatacatacta-ttttgaacacatt-tttc 253  Q
    || ||  |  |||| | |||||| || ||  | || |||| ||||||| |||||||| || | ||||| |||||||||||| ||||||| ||||| ||||    
T  3940311 ctactactacgttcttggttcaattttcagcaactttctccttccctttttccccacattcgaacatg-ttatacatactatttttgaaaacattatttc 3940213  T
Q  254 actcattttcatccaa 269  Q
    | ||||||||||||||    
T  3940212 aatcattttcatccaa 3940197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 27866871 - 27866922
Alignment:
Q  85 cctcagaggtagttaactaccgttggatgatccggcagcagttaactaccgct 137  Q
    |||||| |||||||||||||||||| | || ||||||||||||||||||||||    
T  27866871 cctcagcggtagttaactaccgttgaa-gacccggcagcagttaactaccgct 27866922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 5279733 - 5279798
Alignment:
Q  92 ggtagttaactaccgttggatgatccggcagcagttaactaccgctacagccagcagtagtcaact 157  Q
    |||||||||||||||||||   ||||| | |||||||||||||||||| |||| | ||||| ||||    
T  5279733 ggtagttaactaccgttggcatatccgactgcagttaactaccgctacggccaacggtagttaact 5279798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 27543730 - 27543686
Alignment:
Q  92 ggtagttaactaccgttggatgatccggcagcagttaactaccgct 137  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||    
T  27543730 ggtagttaactactgttg-aggatccggcagcagttaactaccgct 27543686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 5283387 - 5283315
Alignment:
Q  64 acatggaaaatacgactttgtcctcagaggtagttaactaccgttggatgatccggcagcagttaactaccgc 136  Q
    |||||||||||||   |||||| || | |||||||||||||||||||   ||||| |||||||||||| ||||    
T  5283387 acatggaaaatactcatttgtcttcggcggtagttaactaccgttggcacatccgacagcagttaactgccgc 5283315  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 2870171 - 2870254
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaacctaatgatcaaccctg 455  Q
    ||||||||||  ||| |||||||||||||||||||||  | |||||||||||||||||||  |||| |||||||||||||||||    
T  2870171 tcacaaggtacaaatcatgtcataataatacatcaccaccgtcaaagtcaaaatgtacattaaaaagcctaatgatcaaccctg 2870254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 2870000 - 2870068
Alignment:
Q  207 ccccacgtttgtacatgtttatacatactattttgaacaca--tttttcactcattttcatccaatttc 273  Q
    |||||| ||||  |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  2870000 ccccacatttgatcatgtttatacataatattttgaacacatgtttttcactcattttcatccaatttc 2870068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 18701107 - 18701149
Alignment:
Q  388 atgtcataataatacatcaccgtcatcaaagtcaaaatgtaca 430  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  18701107 atgtcataataatacatcaccttcatcatagtcaaaatgtaca 18701149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 28637368 - 28637417
Alignment:
Q  224 tttatacatactattttgaacacatttttcactcattttcatccaatttc 273  Q
    ||||||||||||||||||| |||||||||| |  ||||||||||||||||    
T  28637368 tttatacatactattttgaccacatttttctccaattttcatccaatttc 28637417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 18700844 - 18700900
Alignment:
Q  93 gtagttaactaccgttggatgatccggcagcagttaactaccgctacagccagcagt 149  Q
    |||||||||||||||||    | ||||||||||||||||||||||| || |||||||    
T  18700844 gtagttaactaccgttgaggaagccggcagcagttaactaccgctaaagtcagcagt 18700900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 13825380 - 13825474
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaacctaatg---atcaaccctgctgcctatg 464  Q
    |||||||||| ||| ||||| |||||||||||||| | |||||| ||||||| |||||||| ||||||||||||   ||||||||| |||||||||    
T  13825380 tcacaaggtacgaa-aatgtaataataatacatcatcatcatcatagtcaaactgtacataaaaaaacctaatgataatcaaccctactgcctatg 13825474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 13825166 - 13825273
Alignment:
Q  166 gttcctagttcaaattccaatagctctctctttcccttattccccacgtttgtacatgttt-atacatactattttgaacaca-tttttcactcattttc 263  Q
    |||||| |||||| |||||  |||| |||| |||| || |||||||| ||||| ||||||| |||||||| |||||||||| | |||||||||| |||||    
T  13825166 gttcctggttcaatttccagcagctttctccttccatttttccccacatttgtccatgttttatacataccattttgaacaaattttttcactctttttc 13825265  T
Q  264 atccaatt 271  Q
    ||||||||    
T  13825266 atccaatt 13825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 54315264 - 54315300
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcacc 408  Q
    ||||||| || ||||||||||||||||||||||||||    
T  54315264 tcacaagatacgaataatgtcataataatacatcacc 54315300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 62483 - 62574
Alignment:
Q  182 ccaatagctctctctttcccttattccccacgtttgtacatgtttatacatactattttgaacaca-tttttcactcattttcatccaatttc 273  Q
    ||||||||| |||| ||||||| |||||||| |||| || ||||||||||||| ||||| |||| | ||||||| ||||||||||||||||||    
T  62483 ccaatagct-tctccttccctttttccccacatttgaacttgtttatacataccattttaaacatattttttcaatcattttcatccaatttc 62574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 62678 - 62752
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaacctaatgat 447  Q
    |||||||||| ||| ||||||||||||||||||||||  || || |||||||||||||||| |||| |||||||||    
T  62678 tcacaaggtacgaa-aatgtcataataatacatcaccagcaccatagtcaaaatgtacataaaaaagcctaatgat 62752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 86979 - 86869
Alignment:
Q  27 aaaattgcttatttgatattaagaagtttctattaacacatggaaaatacgactttgtcctcagaggtagttaactaccgttggatgatccggcagcagt 126  Q
    |||||| ||| ||||| || || ||||| ||| ||||||||||||||||| |  ||| || ||| |||||||||||||||||||   ||||| || || |    
T  86979 aaaatttcttttttgacatcaataagttcctaataacacatggaaaatacaaaattgcccacagcggtagttaactaccgttggtatatccgacaacaat 86880  T
Q  127 taactaccgct 137  Q
    |||||||||||    
T  86879 taactaccgct 86869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 26172890 - 26172823
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaac 439  Q
    ||||||||||||||  ||||||||||||||||||||| | |  |||||||||||||||||| ||||||    
T  26172890 tcacaaggtatgaaacatgtcataataatacatcaccataaaaaaagtcaaaatgtacataaaaaaac 26172823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 20725691 - 20725626
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaa 438  Q
    |||||||||| |||| |||||||||||||||||| || |||||||||| |||||||||||| |||||    
T  20725691 tcacaaggtacgaatgatgtcataataatacatc-ccatcatcaaagttaaaatgtacataaaaaaa 20725626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Complemental strand, 21833676 - 21833617
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacat 431  Q
    ||||||||||  |||| || ||||||||||||||||| | ||||||||||||||||||||    
T  21833676 tcacaaggtacaaatagtggcataataatacatcaccattatcaaagtcaaaatgtacat 21833617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 15738151 - 15738193
Alignment:
Q  388 atgtcataataatacatcaccgtcatcaaagtcaaaatgtaca 430  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  15738151 atgtcataataatacatcaccttcatcatagtcaaaatgtaca 15738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 29902443 - 29902389
Alignment:
Q  374 acaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgta 428  Q
    |||||||| |||  ||||||||||||||||||||| |||||| ||||||||||||    
T  29902443 acaaggtacgaaacatgtcataataatacatcaccatcatcatagtcaaaatgta 29902389  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 15737888 - 15737944
Alignment:
Q  93 gtagttaactaccgttggatgatccggcagcagttaactaccgctacagccagcagt 149  Q
    |||||||||||||||||    | ||||||||||||||||||||||| || |||||||    
T  15737888 gtagttaactaccgttgaggaagccggcagcagttaactaccgctaaagtcagcagt 15737944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 29520 - 29455
Alignment:
Q  372 tcacaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtacatataaaaa 438  Q
    |||||||||| |||| |||||||||||||||||| || |||||||||| |||||||||||| |||||    
T  29520 tcacaaggtacgaatgatgtcataataatacatc-ccatcatcaaagttaaaatgtacataaaaaaa 29455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 19802598 - 19802644
Alignment:
Q  92 ggtagttaactaccgttggat-gatccggcagcagttaactaccgct 137  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  19802598 ggtagttaactaccgttggattgatccggcggcagttaactaccgct 19802644  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 39866173 - 39866128
Alignment:
Q  92 ggtagttaactaccgttggatgatccggcagcagttaactaccgct 137  Q
    |||||||||||||||||||   || |||||||||||||||||||||    
T  39866173 ggtagttaactaccgttggtatattcggcagcagttaactaccgct 39866128  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 43036485 - 43036441
Alignment:
Q  92 ggtagttaactaccgttggatgatccggcagcagttaactaccgct 137  Q
    |||||||||||||||||| | || ||||||||||||||||||||||    
T  43036485 ggtagttaactaccgttg-aggacccggcagcagttaactaccgct 43036441  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 16347023 - 16347079
Alignment:
Q  374 acaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtaca 430  Q
    |||||||| |||  |||| |||||||||||||||| || ||| ||||||||||||||    
T  16347023 acaaggtacgaaacatgtaataataatacatcaccatcgtcatagtcaaaatgtaca 16347079  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 45838 - 45782
Alignment:
Q  374 acaaggtatgaataatgtcataataatacatcaccgtcatcaaagtcaaaatgtaca 430  Q
    |||||||| |||  |||| |||||||||||||||| || ||| ||||||||||||||    
T  45838 acaaggtacgaaacatgtaataataatacatcaccatcgtcatagtcaaaatgtaca 45782  T

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