View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3422_low_9 (Length: 245)
Name: NF3422_low_9
Description: NF3422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3422_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 51671365 - 51671145
Alignment:
| Q |
19 |
gcagccacttacgttcttgcgtcgtagccaaagacattttatttggcattggatcctgtctccctccannnnnnnnnnnnnnggttctatcacaattaag |
118 |
Q |
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| T |
51671365 |
gcagccacttacgttcttgcgtcgtagccaaagacattttatttggcattggatcctgtctccctccatttttattttttttggttctatcacaattaag |
51671266 |
T |
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| Q |
119 |
aacgaaacaatctacatttctttcattgnnnnnnnnnnnnnnnngaggggatttctttcattgttatagctttgaaaatataattataattattagagcg |
218 |
Q |
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| T |
51671265 |
aacgaaacaatctacatttctttcattgttttttttttt------aggggatttctttcattgttatagctttgaaaatataattataattattagagcg |
51671172 |
T |
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| Q |
219 |
tgaccataaggggtccaaatgtcattt |
245 |
Q |
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| T |
51671171 |
tgaccataaggggtccaaatgtcattt |
51671145 |
T |
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