View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3423_high_2 (Length: 371)
Name: NF3423_high_2
Description: NF3423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3423_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 129 - 350
Target Start/End: Complemental strand, 47552772 - 47552551
Alignment:
| Q |
129 |
atgcattataacgtgctaatctactcttttcccaccttccaaaaataacggaactcattatctttattacaaaattattcaaattgaaaattacttgnnn |
228 |
Q |
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| T |
47552772 |
atgcattataacgtgctaatctactcttttcccaccttccaaaaataacggaactcattatctttattacaaaattattgaaattgaaaattacttg-tt |
47552674 |
T |
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| Q |
229 |
nnnnnataaggagcacaaagaaagaagaagattaaatttaaagatagatacatactcatttattcttaaagac----nnnnnnnnagtacaagacgactt |
324 |
Q |
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| T |
47552673 |
ttttgataaggagcacaaagaaagaagaag---aagattaaagatagatacatactcatctattcttaaagacttttttttttttagtacaagacgactt |
47552577 |
T |
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| Q |
325 |
ttaattataaacaaaactatgatgat |
350 |
Q |
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| T |
47552576 |
ttaattataaacaaaactatgatgat |
47552551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 47552854 - 47552788
Alignment:
| Q |
29 |
gatatttgatcaaatatgtcaccttcatggggtcacaattattcaaatataacgtgcttctttgtta |
95 |
Q |
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| T |
47552854 |
gatatttgatcaaatatgtcaccttcatggggtcacaattattcaaatataacgtgcttctttgtta |
47552788 |
T |
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