View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3424_high_1 (Length: 812)

Name: NF3424_high_1
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3424_high_1
NF3424_high_1
[»] chr7 (4 HSPs)
chr7 (19-550)||(12825285-12825817)
chr7 (549-812)||(12825839-12826101)
chr7 (83-227)||(35400749-35400893)
chr7 (211-336)||(35024563-35024688)
[»] chr4 (4 HSPs)
chr4 (68-460)||(37035320-37035710)
chr4 (244-436)||(24189326-24189517)
chr4 (639-810)||(24188940-24189111)
chr4 (89-144)||(24189605-24189660)
[»] chr3 (3 HSPs)
chr3 (644-810)||(47819600-47819766)
chr3 (80-309)||(47820122-47820348)
chr3 (298-336)||(28571641-28571679)
[»] chr6 (2 HSPs)
chr6 (211-428)||(34774684-34774900)
chr6 (84-310)||(11779930-11780156)
[»] chr1 (3 HSPs)
chr1 (211-428)||(42748870-42749086)
chr1 (715-810)||(42749392-42749487)
chr1 (78-109)||(47318630-47318661)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Original strand, 12825285 - 12825817
Alignment:
Q  19 ctaccacccaacaacggaacagaaccaaaggtagttaaagcagccacgtaaggcattcc-tcggattccaacaccattcataatacatacaaggaggcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12825285 ctaccacccaacaacggaacagaaccaaaggtagttaaagcagccgcgtaaggcattccctcggattccaacaccattcataatacatacaaggaggcat 12825384  T
Q  118 agaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgccgagttccgattattaaaaatcttatcattcctt 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12825385 agaaattctatccaacgaccaccgccaagtcaacacctttacatcatccaccatttcatccaccgctgagttccgattattaaaaatcttatcattcctt 12825484  T
Q  218 gctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacga 317  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12825485 gctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaaagaacga 12825584  T
Q  318 ataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatg 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12825585 ataaattaggcggaattaaatgaaacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgacg 12825684  T
Q  418 attcatccaccgtctcacaaaaggtacaacactgaggagcatctgttggtaatacattcatcatcgaaagattcacccttgtaggtatttgatcatatag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  12825685 attcatccaccgtctcacaaaaggtacaacactgaggagcatccgttggtaatacattcatcatcgaaagattcacccttgtagatattcgatcatatag 12825784  T
Q  518 gaacttccaagaaaacgctacaaccttcgaagg 550  Q
    || ||||||||||||||||||||||||||||||    
T  12825785 gagcttccaagaaaacgctacaaccttcgaagg 12825817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 549 - 812
Target Start/End: Original strand, 12825839 - 12826101
Alignment:
Q  549 ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttatcatatgttgatttgaccgnnnnnnntccctgactc 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||| ||||    
T  12825839 ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttataatatgttgatttgaccgaaaaaa-tccctaactc 12825937  T
Q  649 ttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaac 748  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825938 ttccaaaccccaccgccacctatcctcctcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaac 12826037  T
Q  749 tccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacac 812  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12826038 tcccttctccactcgaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacac 12826101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
Q  83 ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg 182  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||||||| | ||| | ||||| |||  |||| |||||||||||||||||| ||||      
T  35400893 ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat 35400794  T
Q  183 ccgagttccgattattaaaaatcttatcattccttgctttccaca 227  Q
     ||  || || |||||||||| |||||||||||| ||||||||||    
T  35400793 acggatttcggttattaaaaaccttatcattcctcgctttccaca 35400749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 35024563 - 35024688
Alignment:
Q  211 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 310  Q
    |||||| |||||||| || ||| |||||||   |||||||||||| |||||  | |||||  ||| |||||||||||| || ||  ||||||||||||||    
T  35024563 attcctagctttccataacacccaaatcgtaatatgccaaataagccttaattcgttacgagttctcttattcctctcccctccgaaccaacactcccaa 35024662  T
Q  311 tgaacgaataaattaggcggaattaa 336  Q
     | | ||| || ||||| ||||||||    
T  35024663 aggatgaagaagttagggggaattaa 35024688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 68 - 460
Target Start/End: Complemental strand, 37035710 - 37035320
Alignment:
Q  68 aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc 166  Q
    |||||||||| |||||| ||||||||| |||||  |||||||||||||||| | |||| | |||||||||||||||||||||||  |||| | ||| |||    
T  37035710 aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc 37035611  T
Q  167 accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccat 266  Q
    || || ||  ||||| |||  |||||||||||||||||||| ||||| || |||||||| |||||| |||||||   ||||||||| | |||||| || |    
T  37035610 acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccct 37035511  T
Q  267 tacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacac 366  Q
     ||| || |||||| ||||||| || |||| ||||||||||||    || ||||||||||||||||||| |  |||| | ||| | || |||||| | |     
T  37035510 gacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaattacaataaacctctcccacca-ccccataatat 37035412  T
Q  367 cttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcacaaaaggtacaacactgaggagcatc 460  Q
    |  |||| |||||| |||||||||||||||| ||||| |||||| |||| |||||||||||  ||||||| ||||||||| |  ||||||||||    
T  37035411 cacgccacacccttccggcaacctcacaatggagaaaaagatgagttgacgattcatccac--tctcacacaaggtacaaaaacgaggagcatc 37035320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 244 - 436
Target Start/End: Complemental strand, 24189517 - 24189326
Alignment:
Q  244 atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaataaattaggcggaattaaatgaaac 343  Q
    |||||||||||||||||  || ||||| |||| |||||||  ||| ||||||| ||||||||||||| || |||| || |||||| |||||||  ||| |    
T  24189517 atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaaagagcgaacaagttaggcagaattaagagaatc 24189418  T
Q  344 ttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcaca 436  Q
     | |||   |  || ||| | ||||||||| |||||| | || || |||||||||||||| || |||||||| |||||||||||| |||||||    
T  24189417 ctctcc-ccctaccgcataataccttgccacacccttcccgctacatcacaatgaagaaagaggtgaattgacgattcatccaccctctcaca 24189326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 639 - 810
Target Start/End: Complemental strand, 24189111 - 24188940
Alignment:
Q  639 tccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccca 738  Q
    |||| ||||| || ||||||||| |||||||||| || |||||||||||  ||||    ||||||||   ||| ||| |  | || ||||||||||||||    
T  24189111 tccccgactcctctaaaccccacttccacctatcttcctcatgagaccaagtcatgccttccaaatctaccaatagatttgcgaagagttgctcctccca 24189012  T
Q  739 accaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac 810  Q
    | ||||||| |||  |||||||||||||||||||| | || | || || ||| |||||||||| || |||||    
T  24189011 atcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccac 24188940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
Q  89 caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca 144  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||    
T  24189660 caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca 24189605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 644 - 810
Target Start/End: Complemental strand, 47819766 - 47819600
Alignment:
Q  644 gactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaa 743  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||||||||||| ||||||||||  ||| ||| || | | |||||||||||||||| |||    
T  47819766 gactcttccaacccccacctccacctatcctccacatgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaa 47819667  T
Q  744 aaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac 810  Q
    |||||||| | |||||||||||||| |||| |||| | || |||||  ||||||||||||| |||||    
T  47819666 aaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccac 47819600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 80 - 309
Target Start/End: Complemental strand, 47820348 - 47820122
Alignment:
Q  80 ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca 179  Q
    |||||||||||||| |||||  ||||||| |||| ||| |  ||| | ||||||||||||| |||||| | | |||| | ||| ||||| ||   |||||    
T  47820348 ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca 47820252  T
Q  180 ccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgctt 279  Q
    || || | ||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| ||   ||| || | |||    
T  47820251 ccaccaaattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactctt 47820152  T
Q  280 attcctctctccaccacaccaacactccca 309  Q
     |||||||| ||||| ||||||||||||||    
T  47820151 cttcctctccccaccgcaccaacactccca 47820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 28571679 - 28571641
Alignment:
Q  298 ccaacactcccaatgaacgaataaattaggcggaattaa 336  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  28571679 ccaacactcccaatgcacaaataaattaggcggaattaa 28571641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 428
Target Start/End: Original strand, 34774684 - 34774900
Alignment:
Q  211 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 310  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||||  ||| |||||||||||| || || |||||||||||||||    
T  34774684 attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa 34774783  T
Q  311 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 410  Q
     | | ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  | |||||||||||||| ||||||||||||    
T  34774784 aggatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccatactctaccagcaacctcacaatggagaaatagatga 34774882  T
Q  411 attgatgattcatccacc 428  Q
    ||||||||||| ||||||    
T  34774883 attgatgattcgtccacc 34774900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 310
Target Start/End: Complemental strand, 11780156 - 11779930
Alignment:
Q  84 tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgc 183  Q
    ||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| | | |  |||| |  || ||||| ||||| |||||  |    
T  11780156 tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttccacatc 11780057  T
Q  184 cgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattc 283  Q
    ||  |||||   ||||||||   ||||||||||||| ||||||||  || | | ||| |  |||||||||||||  |  || |||| ||||| ||||| |    
T  11780056 cggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaataagtcgaagccccttacagattctcttatcc 11779957  T
Q  284 ctctctccaccacaccaacactcccaa 310  Q
    |||||| |||||| |||||||||||||    
T  11779956 ctctctacaccactccaacactcccaa 11779930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 211 - 428
Target Start/End: Original strand, 42748870 - 42749086
Alignment:
Q  211 attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa 310  Q
    |||||| |||||||| || ||| ||||||| | |||||||||||| ||||| ||  ||||  ||| |||||||||||| || || | |||||||||||||    
T  42748870 attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa 42748969  T
Q  311 tgaacgaataaattaggcggaattaaatgaaacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatga 410  Q
     ||| ||| || ||||| ||||||||    | | | ||| | || |||||| ||||| ||||| || ||  |||||||||||||||||||||| ||||||    
T  42748970 agaatgaagaagttagggggaattaacatcatcctctcccacca-ccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatga 42749068  T
Q  411 attgatgattcatccacc 428  Q
    ||||| ||| | ||||||    
T  42749069 attgaggatccgtccacc 42749086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 715 - 810
Target Start/End: Original strand, 42749392 - 42749487
Alignment:
Q  715 actcacaaatagttgctcctcccaaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac 810  Q
    |||| |||| ||||||||||||||| |||||||||||  |||||| ||||| | ||||  |||||| | |||| || ||||||||||||| |||||    
T  42749392 actcgcaaaaagttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccac 42749487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
Q  78 tcggattccaacaccattcataatacatacaa 109  Q
    ||||||||||||||||||||||||||||||||    
T  47318630 tcggattccaacaccattcataatacatacaa 47318661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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